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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
4,992 cells
•
Coutant et al., 2023
Spatial Transcriptomics Reveal Pitfalls and Opportunities for the Detection of Rare High-Plasticity Breast Cancer Subtypes
Explore
h5ad
Homo sapiens
Homo sapiens
Perivascular cell
+6
Perivascular cell
Breast
Breast
Adult stage
Adult stage
Triple-negative breast carcinoma
Triple-negative breast carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Perivascular cell
Endothelial cell
Epithelial cell
Myeloid cell
Malignant cell
B cell
Fibroblast
Tissue
Breast
Developmental stage
Adult stage
Disease
Triple-negative breast carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GSE213688
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+10
Neutrophil
Right cardiac atrium
Right cardiac atrium
Seventh decade stage
Seventh decade stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Neutrophil
Endocardial cell
Endothelial cell of artery
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Adipocyte
Glial cell
Vein endothelial cell
Regular atrial cardiac myocyte
Monocyte
Fibroblast of cardiac tissue
Tissue
Right cardiac atrium
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kuppe et al., 2022
Spatial multi-omic map of human myocardial infarction
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+8
Cardiac endothelial cell
Heart left ventricle
Heart left ventricle
58-year-old stage
58-year-old stage
Myocardial infarction
Myocardial infarction
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Mast cell
Lymphoid lineage restricted progenitor cell
Immature innate lymphoid cell
Neuronal receptor cell
Pericyte
Cardiac muscle myoblast
Smooth muscle myoblast
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
58-year-old stage
Disease
Myocardial infarction
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
zenodo.org
github.com
zenodo.org
github.com
kramannlab.com
zenodo.org
ega-archive.org
zenodo.org
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Muscle cell
+18
Muscle cell
Bronchus
Bronchus
Seventh decade stage
Seventh decade stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Muscle cell
Airway submucosal gland duct basal cell
Ciliated cell
Lung secretory cell
Non-myelinating schwann cell
Iga plasma cell
Blood vessel smooth muscle cell
Basal cell
Goblet cell
Pulmonary alveolar type 1 cell
Serous secreting cell of bronchus submucosal gland
Vein endothelial cell
Respiratory tract suprabasal cell
Lung perichondrial fibroblast
Adventitial cell
Fibroblast
Pulmonary alveolar type 2 cell
Lung pericyte
Chondrocyte
Tissue
Bronchus
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
PRJEB52292
explore.data.humancellatlas.org
E-MTAB-11640
S-BIAD570
5locationslung.cellgeni.sanger.ac.uk
CELLxGENE
4,992 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Club cell
+21
Club cell
Lung parenchyma
Lung parenchyma
Seventh decade stage
Seventh decade stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Club cell
Muscle cell
Blood vessel endothelial cell
Ciliated cell
Endothelial cell of lymphatic vessel
Erythrocyte
Iga plasma cell
Blood vessel smooth muscle cell
Endothelial cell of artery
Igg plasma cell
Lung macrophage
Pulmonary alveolar type 1 cell
Plasmablast
Fibroblast of lung
Alveolar macrophage
Vein endothelial cell
Megakaryocyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Pulmonary artery endothelial cell
Adventitial cell
Conventional dendritic cell
Pulmonary alveolar type 2 cell
Tissue
Lung parenchyma
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
PRJEB52292
explore.data.humancellatlas.org
E-MTAB-11640
S-BIAD570
5locationslung.cellgeni.sanger.ac.uk
CELLxGENE
4,992 cells
•
Suo et al., 2022
Mapping the developing human immune system across organs
Explore
h5ad
Homo sapiens
Homo sapiens
Hepatocyte
+4
Hepatocyte
Liver
Liver
16th week post-fertilization stage
16th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Hepatocyte
Erythroid lineage cell
Epithelial cell
Vascular associated smooth muscle cell
Double negative thymocyte
Tissue
Liver
Developmental stage
16th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
scVI Models
Teichmann Lab
cells.ucsc.edu
E-MTAB-11343
Data processing and analysis scripts
PSC-ATO protocol
explore.data.humancellatlas.org
singlecell.broadinstitute.org
E-MTAB-11341
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+11
Endothelial cell
Labial gland
Labial gland
40-year-old stage
40-year-old stage
Immune system disorder
+1
Immune system disorder
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Ionocyte
Smooth muscle cell
Myoepithelial cell
Cd8-positive, alpha-beta cytotoxic t cell
Duct epithelial cell
Acinar cell of salivary gland
Cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta regulatory t cell
Fibroblast
Dendritic cell
Tissue
Labial gland
Developmental stage
40-year-old stage
Disease
Immune system disorder
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
phs002446
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+11
Natural killer cell
Skin of temple
Skin of temple
68-year-old stage
68-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Natural killer cell
Endothelial cell of lymphatic vessel
Mast cell
Basal cell
Schwann cell
Smooth muscle cell
Endothelial cell of vascular tree
Basal cell of epidermis
Macrophage
Pericyte
Suprabasal keratinocyte
Fibroblast
Tissue
Skin of temple
Developmental stage
68-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Spatial Skin Atlas
scRNAseq (E-MTAB-13085)
Visium (E-MTAB-13084)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Zhang et al., 2023
A human embryonic limb cell atlas resolved in space and time
Explore
h5ad
Homo sapiens
Homo sapiens
Osteoblast
+18
Osteoblast
Hindlimb
Hindlimb
Carnegie stage 23
Carnegie stage 23
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Osteoblast
Muscle cell
Fibroblast of dermis
Peridermal cell
Hypertrophic chondrocyte
Tendon cell
Basal cell
Endothelial cell of artery
Schwann cell
Smooth muscle cell
Articular chondrocyte
Macrophage
Vein endothelial cell
Mesenchymal cell
Megakaryocyte
Pericyte
Reticulocyte
Fibroblast
Chondrocyte
Tissue
Hindlimb
Developmental stage
Carnegie stage 23
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
developmental.cellatlas.io
mouse scRNA-seq
human Visium
human scRNA-seq
github.com
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+5
Endothelial cell
Labial gland
Labial gland
61-year-old stage
+1
61-year-old stage
Sjogren syndrome
Sjogren syndrome
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Duct epithelial cell
Acinar cell of salivary gland
Fibroblast
Dendritic cell
Tissue
Labial gland
Developmental stage
61-year-old stage
67-year-old stage
Disease
Sjogren syndrome
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
phs002446
CELLxGENE
4,992 cells
•
Kuppe et al., 2022
Spatial multi-omic map of human myocardial infarction
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+8
Cardiac endothelial cell
Heart left ventricle
Heart left ventricle
52-year-old stage
52-year-old stage
Myocardial infarction
Myocardial infarction
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Mast cell
Lymphoid lineage restricted progenitor cell
Immature innate lymphoid cell
Neuronal receptor cell
Pericyte
Cardiac muscle myoblast
Smooth muscle myoblast
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
52-year-old stage
Disease
Myocardial infarction
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
zenodo.org
github.com
zenodo.org
github.com
kramannlab.com
zenodo.org
ega-archive.org
zenodo.org
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Dendritic cell, human
+11
Dendritic cell, human
Atrioventricular node
Atrioventricular node
Fifth decade stage
Fifth decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Dendritic cell, human
Endothelial cell of lymphatic vessel
Endothelial cell of artery
Capillary endothelial cell
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Glial cell
Regular atrial cardiac myocyte
Regular ventricular cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Atrioventricular node
Developmental stage
Fifth decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
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