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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
4,992 cells
•
Kuppe et al., 2022
Spatial multi-omic map of human myocardial infarction
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+6
Cardiac endothelial cell
Heart left ventricle
Heart left ventricle
51-year-old stage
51-year-old stage
Myocardial infarction
Myocardial infarction
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Mast cell
Lymphoid lineage restricted progenitor cell
Immature innate lymphoid cell
Cardiac muscle myoblast
Smooth muscle myoblast
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
51-year-old stage
Disease
Myocardial infarction
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
zenodo.org
github.com
zenodo.org
github.com
kramannlab.com
zenodo.org
ega-archive.org
zenodo.org
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+10
Endothelial cell
Labial gland
Labial gland
48-year-old stage
+1
48-year-old stage
Sjogren syndrome
+1
Sjogren syndrome
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Ionocyte
Smooth muscle cell
Myoepithelial cell
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Duct epithelial cell
Acinar cell of salivary gland
Fibroblast
Dendritic cell
Tissue
Labial gland
Developmental stage
48-year-old stage
56-year-old stage
Disease
Sjogren syndrome
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
phs002446
CELLxGENE
4,992 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Muscle cell
+30
Muscle cell
Bronchus
Bronchus
Eighth decade stage
Eighth decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Muscle cell
Airway submucosal gland duct basal cell
Blood vessel endothelial cell
Ciliated cell
Endothelial cell of lymphatic vessel
Lung secretory cell
Non-myelinating schwann cell
Lung interstitial macrophage
Iga plasma cell
Blood vessel smooth muscle cell
Basal cell
Endothelial cell of artery
Smooth muscle cell of the pulmonary artery
Igg plasma cell
Bronchus fibroblast of lung
Myoepithelial cell
Lung macrophage
Memory b cell
Pulmonary alveolar type 1 cell
Serous secreting cell of bronchus submucosal gland
Fibroblast of lung
Vein endothelial cell
Cd14-positive monocyte
Respiratory tract suprabasal cell
Lung perichondrial fibroblast
Adventitial cell
Naive b cell
Fibroblast
Pulmonary alveolar type 2 cell
Lung pericyte
Chondrocyte
Tissue
Bronchus
Developmental stage
Eighth decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
PRJEB52292
explore.data.humancellatlas.org
E-MTAB-11640
S-BIAD570
5locationslung.cellgeni.sanger.ac.uk
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Endocardial cell
+18
Endocardial cell
Heart right ventricle
Heart right ventricle
Seventh decade stage
Seventh decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endocardial cell
Dendritic cell, human
Endothelial cell of lymphatic vessel
Cd8-positive, alpha-beta t cell
Endothelial cell of artery
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Adipocyte
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Cd16-positive, cd56-dim natural killer cell, human
Glial cell
Plasma cell
Vein endothelial cell
Mesothelial cell
Pericyte
Mucosal invariant t cell
Regular ventricular cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Heart right ventricle
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Suo et al., 2022
Mapping the developing human immune system across organs
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+10
T cell
Thymus
Thymus
18th week post-fertilization stage
18th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Cycling t cell
Alpha-beta t cell
Medullary thymic epithelial cell type 3
Medullary thymic epithelial cell type 1
Double-positive, alpha-beta thymocyte
Epithelial cell
Cd4-positive, alpha-beta thymocyte
Conventional dendritic cell
Fibroblast
Dendritic cell
Tissue
Thymus
Developmental stage
18th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
scVI Models
Teichmann Lab
cells.ucsc.edu
E-MTAB-11343
Data processing and analysis scripts
PSC-ATO protocol
explore.data.humancellatlas.org
singlecell.broadinstitute.org
E-MTAB-11341
CELLxGENE
4,992 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Muscle cell
+11
Muscle cell
Lung parenchyma
Lung parenchyma
59-year-old stage
59-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Muscle cell
Blood vessel endothelial cell
Ciliated cell
Endothelial cell of lymphatic vessel
Blood vessel smooth muscle cell
Lung macrophage
Pulmonary alveolar type 1 cell
Plasmablast
Fibroblast of lung
Alveolar macrophage
Adventitial cell
Pulmonary alveolar type 2 cell
Tissue
Lung parenchyma
Developmental stage
59-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
PRJEB52292
explore.data.humancellatlas.org
E-MTAB-11640
S-BIAD570
5locationslung.cellgeni.sanger.ac.uk
CELLxGENE
4,992 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+5
T cell
Thymus
Thymus
5-month-old stage
5-month-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Epithelial cell
Macrophage
Myelocyte
B cell
Tissue
Thymus
Developmental stage
5-month-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
CELLxGENE
4,992 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+5
T cell
Thymus
Thymus
6-month-old stage
6-month-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Epithelial cell
Macrophage
Myelocyte
B cell
Dendritic cell
Tissue
Thymus
Developmental stage
6-month-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+7
Natural killer cell
Skin of scalp
Skin of scalp
68-year-old stage
68-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Natural killer cell
Schwann cell
Smooth muscle cell
Endothelial cell of vascular tree
Basal cell of epidermis
Pericyte
Suprabasal keratinocyte
Fibroblast
Tissue
Skin of scalp
Developmental stage
68-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Spatial Skin Atlas
scRNAseq (E-MTAB-13085)
Visium (E-MTAB-13084)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
Tracheobronchial smooth muscle cell
+22
Tracheobronchial smooth muscle cell
Lung
Lung
20th week post-fertilization stage
20th week post-fertilization stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Tracheobronchial smooth muscle cell
Club cell
Endothelial cell of lymphatic vessel
Erythrocyte
Cd8-positive, alpha-beta t cell
Pulmonary neuroendocrine cell
Basal cell
Capillary endothelial cell
Respiratory tract epithelial cell
Lung multiciliated epithelial cell
Bronchus fibroblast of lung
Group 3 innate lymphoid cell
Pulmonary alveolar type 1 cell
Fibroblast of lung
Cd4-positive, alpha-beta t cell
Vein endothelial cell
Megakaryocyte
Pulmonary interstitial fibroblast
Pericyte
Epithelial cell of lung
Vascular associated smooth muscle cell
Pulmonary alveolar type 2 cell
Chondrocyte
Tissue
Lung
Developmental stage
20th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
scRNA / GEX / VDJ (E-MTAB-11278)
Organoid (E-MTAB-11267)
Visium (E-MTAB-11265)
ATAC-seq (E-MTAB-11266)
fetal-lung.cellgeni.sanger.ac.uk
genome.ucsc.edu
github.com
CELLxGENE
4,992 cells
•
Wu et al., 2021
A single-cell and spatially resolved atlas of human breast cancers
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Breast
Breast
Breast carcinoma
Breast carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Smooth muscle cell
Epithelial cell
Myeloid cell
Plasmablast
B cell
Tissue
Breast
Developmental stage
Disease
Breast carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
singlecell.broadinstitute.org
github.com
GSE176078
EGAS00001005173
zenodo.org
CELLxGENE
4,992 cells
•
Suo et al., 2022
Mapping the developing human immune system across organs
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+13
T cell
Thymus
Thymus
16th week post-fertilization stage
16th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
B-1 b cell
Alpha-beta t cell
Corticomedullary thymic epithelial cell
Medullary thymic epithelial cell type 1
Double-positive, alpha-beta thymocyte
Epithelial cell
Macrophage
Regulatory t cell
Mesenchymal cell
Cd4-positive, alpha-beta thymocyte
Vascular associated smooth muscle cell
Myofibroblast cell
Fibroblast
Tissue
Thymus
Developmental stage
16th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
scVI Models
Teichmann Lab
cells.ucsc.edu
E-MTAB-11343
Data processing and analysis scripts
PSC-ATO protocol
explore.data.humancellatlas.org
singlecell.broadinstitute.org
E-MTAB-11341
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