Homo sapiens

Natural killer cell Mast cell Platelet Mucosa-associated lymphoid tissue macrophage Choroid plexus macrophage Microglial cell Innate lymphoid cell Meningeal macrophage Common myeloid progenitor Megakaryocyte Metamyelocyte B cell Promyelocyte Perivascular macrophage Monocyte Dendritic cell

Forebrain meninges Brain meninx Meninx

13th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage Carnegie stage 23 10th week post-fertilization stage Carnegie stage 21 Carnegie stage 16 Carnegie stage 18

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Hepatocyte Endothelial cell of periportal hepatic sinusoid Gamma-delta t cell Alpha-beta t cell Endothelial cell of hepatic portal vein Inflammatory macrophage Erythroid lineage cell Leukocyte Hepatic stellate cell Macrophage Endothelial cell of pericentral hepatic sinusoid Mature b cell Cholangiocyte Plasma cell

Caudate lobe of liver

Life cycle

Normal

10x genomics v2

Homo sapiens

Endothelial cell of hepatic sinusoid Hepatocyte Endothelial cell of periportal hepatic sinusoid Erythrocyte Gamma-delta t cell Alpha-beta t cell Inflammatory macrophage Hepatic stellate cell Macrophage Innate lymphoid cell Cholangiocyte Plasma cell B cell

Caudate lobe of liver

21-year-old stage 65-year-old stage 26-year-old stage 44-year-old stage 41-year-old stage

Normal

Female Male

10x 3' v2

Cell

Mus musculus

Cardiac valve cell Spinal cord interneuron Premigratory neural crest cell Paraxial cell Notochordal cell Neuroplacodal cell Neurectodermal cell Hemangioblast Mesodermal cell Gut endothelial cell Primitive red blood cell Splanchnic mesodermal cell Surface ectodermal cell Midbrain dopaminergic neuron Endodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Gallus gallus

Early spermatid Sertoli cell Late spermatid Obsolete somatic cell Spermatocyte Spermatogonium

Testis

Post-juvenile adult stage

Normal

Male

10x genomics v3

Mus musculus

T cell Granulosa cell Blood vessel endothelial cell Stromal cell Endothelial cell of lymphatic vessel Cumulus granulosa cell Smooth muscle cell Steroidogenic stromal cell of ovary Endothelial cell of vascular tree Ovarian surface epithelial cell Adipocyte Macrophage Oviduct secretory cell Plasma cell Oocyte Late luteal cell Atretic granulosa cell Early luteal cell Theca cell Dendritic cell Ovarian fibroblast Mural granulosa cell

Ovary

3-month-old stage

Normal

Female

Slide-seqv2

Microcebus murinus

Endothelial cell of hepatic sinusoid Neutrophil Hepatocyte Natural killer cell Endothelial cell Mature nk t cell Hematopoietic precursor cell Cd8-positive, alpha-beta t cell Erythroid lineage cell Plasmacytoid dendritic cell Lymphocyte Macrophage Plasma cell Cd4-positive, alpha-beta t cell Mesothelial cell B cell Monocyte Basophil Conventional dendritic cell Fibroblast Dendritic cell Intrahepatic cholangiocyte

Liver

Post-juvenile adult stage

Normal

Female Male

Smart-seq2 10x 3' v2

Cell

Microcebus murinus

Homo sapiens

Glutamatergic neuron

Entorhinal cortex

87-year-old stage 71-year-old stage 82-year-old stage 50-year-old stage 72-year-old stage 80 year-old and over stage 77-year-old stage 60-year-old stage

Normal Alzheimer disease

Male

10x 3' v2

Nucleus

Homo sapiens

Neuron Mesenchymal stem cell Myofibroblast cell Fibroblast

Kidney

13th week post-fertilization stage 12th week post-fertilization stage 16th week post-fertilization stage 9th week post-fertilization stage 10th week post-fertilization stage Embryonic stage

Normal

Female Male

10x 3' v2

Cell

Mus musculus

Tuft cell of large intestine Secretory cell Enteroendocrine cell Intestinal crypt stem cell Large intestine goblet cell Enterocyte of epithelium of large intestine Epithelial cell of large intestine

Large intestine

3-month-old stage 20-month-old stage and over 18-month-old stage

Normal

Female Male

Smart-seq2

Cell

Macaca mulatta

T cell Club cell Endothelial cell Mast cell Pre-natural killer cell Epithelial cell Plasmacytoid dendritic cell Enteroendocrine cell Basophil mast progenitor cell Goblet cell Tuft cell Pulmonary alveolar type 1 cell Alveolar macrophage Enterocyte Plasma cell Cd14-positive monocyte Eosinophil Ciliated epithelial cell B cell Epithelial fate stem cell Fibroblast Dendritic cell Enterocyte of epithelium proper of large intestine Pulmonary alveolar type 2 cell Non-classical monocyte

Disease Hiv infectious disease

Seq-well