Homo sapiens

Macrophage

Choroid plexus epithelium Striatum Medulla oblongata Hindbrain Telencephalon Cortex Midbrain Dorsal plus ventral thalamus Lower layers of the cortex Frontal cortex Entorhinal cortex Midbrain tectum Metencephalon Basal forebrain Cerebellum Brain Hypothalamus Cerebellar peduncular complex Upper layers of the cortex Caudate-putamen Hippocampal formation Diencephalon Pons Cerebral subcortex Occipital cortex Forebrain Head

13th week post-fertilization stage 14th week post-fertilization stage 15th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 Carnegie stage 16 Carnegie stage 15 Carnegie stage 18 11th week post-fertilization stage

Normal

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Lamp5 gabaergic interneuron

Neocortex

Adult stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

T cell Hepatocyte Endothelial cell Mature nk t cell Macrophage Malignant cell Monocyte Fibroblast

Liver

41-year-old stage

Breast cancer

Female

Slide-seqv2

Homo sapiens

T cell Central nervous system macrophage Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Amygdala excitatory neuron Committed oligodendrocyte precursor Dentate gyrus granule cell Hippocampal ca1-3 neuron Lamp5 lhx6 neuron Pvalb chandelier gabaergic interneuron Medial ganglionic eminence derived interneuron Ependymal cell Microglial cell Pericyte Neuron Caudal ganglionic eminence derived interneuron Vascular associated smooth muscle cell Sst chodl gabaergic interneuron Astrocyte Fibroblast Hippocampal ca4 neuron

Rostral ca3

50-year-old stage

Normal

Male

10x 3' v3

Nucleus

Mus musculus

T cell Granulosa cell Blood vessel endothelial cell Stromal cell Endothelial cell of lymphatic vessel Cumulus granulosa cell Mast cell Smooth muscle cell Steroidogenic stromal cell of ovary Endothelial cell of vascular tree Ovarian surface epithelial cell Adipocyte Macrophage Oviduct secretory cell Plasma cell Oocyte Late luteal cell Atretic granulosa cell Early luteal cell Theca cell Dendritic cell Ovarian fibroblast Mural granulosa cell

Ovary

12-month-old stage

Normal

Female

Slide-seqv2

Homo sapiens

Bergmann glial cell

Pontine reticular formation Parabrachial nucleus Nucleus of medulla oblongata Red nucleus Pontine tegmentum Globus pallidus Septal nuclear complex Cerebellar nuclear complex Dorsal tegmental nucleus Midbrain tectum Inferior olivary complex Cerebrocerebellum Pulvinar nucleus Cerebellar vermis Spinal cord Mammillary body

42-year-old stage 29-year-old stage 50-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Erythrocyte Endothelial cell Fibroblast

Pleural effusion Lung Axilla Liver Bone spine Brain Adrenal gland Lymph node

69-year-old stage 75-year-old stage 65-year-old stage 71-year-old stage 85-year-old stage 68-year-old stage 44-year-old stage 55-year-old stage 84-year-old stage 82-year-old stage 80-year-old stage 57-year-old stage 72-year-old stage 81-year-old stage 74-year-old stage 67-year-old stage 77-year-old stage 64-year-old stage 62-year-old stage 70-year-old stage 78-year-old stage 47-year-old stage 76-year-old stage 79-year-old stage 73-year-old stage

Lung adenocarcinoma Normal Small cell lung carcinoma

Female Male

10x 3' transcription profiling 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Cardiac neuron

Heart right ventricle Apex of heart Heart left ventricle Interventricular septum

Pediatric stage Sixth decade stage Fifth decade stage Third decade stage Seventh decade stage Postnatal stage Fourth decade stage Eighth decade stage

Arrhythmogenic right ventricular cardiomyopathy Dilated cardiomyopathy Normal Non-compaction cardiomyopathy

Female Male

10x 3' v3 10x 3' v2

Nucleus

Mus musculus

Granulocyte Endothelial cell Neuroendocrine cell Epithelial cell Macrophage Mesenchymal cell Mesenchymal stem cell Smooth muscle cell of trachea Blood cell Fibroblast Basal epithelial cell of tracheobronchial tree Chondrocyte

Trachea

3-month-old stage

Normal

Male

10x 3' v2

Cell

Mus musculus

T cell Granulosa cell Blood vessel endothelial cell Stromal cell Endothelial cell of lymphatic vessel Cumulus granulosa cell Mast cell Smooth muscle cell Steroidogenic stromal cell of ovary Endothelial cell of vascular tree Ovarian surface epithelial cell Adipocyte Macrophage Oviduct secretory cell Plasma cell Oocyte Late luteal cell Atretic granulosa cell Early luteal cell Theca cell Dendritic cell Ovarian fibroblast Mural granulosa cell

Ovary

9-month-old stage

Normal

Female

Slide-seqv2

Mus musculus

Cardiac valve cell Spinal cord interneuron Premigratory neural crest cell Paraxial cell Notochordal cell Neuroplacodal cell Neurectodermal cell Hemangioblast Mesodermal cell Gut endothelial cell Primitive red blood cell Splanchnic mesodermal cell Surface ectodermal cell Midbrain dopaminergic neuron Endodermal cell Anterior visceral endoderm cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Homo sapiens

Glutamatergic neuron

Primary motor cortex

50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus