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Cell Type
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Tissue
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
ASAP
v5
8,304 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Neuron
+7
Neuron
Haltere
Haltere
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Neuron
Fat cell
Glial cell
Hemocyte
Epithelial cell
Muscle cell
Adult glial cell
Sensory neuron
Tissue
Haltere
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ebi.ac.uk
Single Cell Portal
8,268 cells
Explore
Mus musculus
Mus musculus
Pituitary gland cell
Pituitary gland cell
Normal
Normal
Mixed sex
Mixed sex
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
Pituitary gland cell
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v3
Suspension type
CELLxGENE
8,263 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Basal cell
+6
Basal cell
Parotid gland
+1
Parotid gland
34-year-old stage
+4
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Basal cell
Melanocyte
Ionocyte
Epithelial cell
Myoepithelial cell
Acinar cell of salivary gland
Salivary gland glandular cell
Tissue
Parotid gland
Labial gland
Developmental stage
34-year-old stage
26-year-old stage
68-year-old stage
28-year-old stage
24-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Teichmann Lab
E-MTAB-14050
CELLxGENE
8,242 cells
•
Bakken et al., 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Glutamatergic neuron
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Nuclei Isolation from Adult Human Brain Tissue for 10x
Human Tissue Slicing and Dissections for Nuclear Isolations
NeMo Analytics - individual species
Nuclei Isolation from Adult_Human_Brain_Tissue
github.com
Cytosplore Viewer
NeMo Analytics - integrated species
github.com
Preparation of frozen nuclei for single-nucleus RNA
github.com
NeMO Archive
Extraction of Nuclei from Brain Tissue
CELLxGENE
8,213 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
L6b glutamatergic cortical neuron
L6b glutamatergic cortical neuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
L6b glutamatergic cortical neuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
CELLxGENE
8,193 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+9
T cell
Retina
Retina
65-year-old stage
+3
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Retinal pigment epithelial cell
Schwann cell
Melanocyte
Myeloid cell
B cell
Pericyte
Mueller cell
Astrocyte
Tissue
Retina
Developmental stage
65-year-old stage
77-year-old stage
70-year-old stage
79-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GSE135133
singlecell.broadinstitute.org
explore.data.humancellatlas.org
Single Cell Portal
8,190 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+3
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Brain microvascular endothelial cell
Obsolete excitatory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD716) (section 40)
Corresponding registered brain section (MD716) (section 41)
Corresponding registered brain section (MD716) (section 42)
Corresponding registered brain section (MD716) (section 43)
Corresponding registered brain section (MD716) (section 44)
Corresponding registered brain section (MD716) (section 45)
CELLxGENE
8,172 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
T cell
+33
T cell
Pancreas
Pancreas
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
T cell
Neutrophil
Stromal cell
Natural killer cell
Endothelial cell of lymphatic vessel
Non-myelinating schwann cell
Reticular cell
Mature nk t cell
Cd8-positive, alpha-beta t cell
Pancreatic acinar cell
Pancreatic pp cell
Endothelial cell of artery
Capillary endothelial cell
Plasmacytoid dendritic cell
Pancreatic endocrine cell
Pancreatic a cell
Lymphocyte
Adipocyte
Macrophage
Pancreatic d cell
Plasma cell
Cd4-positive, alpha-beta t cell
Vein endothelial cell
Type b pancreatic cell
Mesothelial cell
B cell
Pericyte
Monocyte
Epithelial cell of exocrine pancreas
Vascular associated smooth muscle cell
Pancreatic ductal cell
Conventional dendritic cell
Fibroblast
Dendritic cell
Tissue
Pancreas
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
cells.ucsc.edu
Globus
ASAP
v8
8,172 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Organism
Microcebus murinus
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
CELLxGENE
8,168 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
Oligodendrocyte
Entorhinal cortex
Entorhinal cortex
87-year-old stage
+7
87-year-old stage
Normal
+1
Normal
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Tissue
Entorhinal cortex
Developmental stage
87-year-old stage
71-year-old stage
82-year-old stage
50-year-old stage
72-year-old stage
80 year-old and over stage
77-year-old stage
60-year-old stage
Disease
Normal
Alzheimer disease
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GSE147528
kampmannlab.ucsf.edu
Synapse
explore.data.humancellatlas.org
CELLxGENE
8,166 cells
•
Bakken et al., 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Explore
h5ad
Callithrix jacchus
Callithrix jacchus
Glutamatergic neuron
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Callithrix jacchus
Cell type
Glutamatergic neuron
Tissue
Primary motor cortex
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Nuclei Isolation from Adult Human Brain Tissue for 10x
Human Tissue Slicing and Dissections for Nuclear Isolations
NeMo Analytics - individual species
Nuclei Isolation from Adult_Human_Brain_Tissue
github.com
Cytosplore Viewer
NeMo Analytics - integrated species
github.com
Preparation of frozen nuclei for single-nucleus RNA
github.com
NeMO Archive
Extraction of Nuclei from Brain Tissue
CELLxGENE
8,156 cells
•
Chen et al., 2025
Determinants of sensitivity to HER2-targeted antibody drug conjugates in urothelial cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Neoplastic cell
Neoplastic cell
Urinary bladder
Urinary bladder
Adult stage
Adult stage
Urinary bladder cancer
Urinary bladder cancer
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neoplastic cell
Tissue
Urinary bladder
Developmental stage
Adult stage
Disease
Urinary bladder cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
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