Homo sapiens

Endothelial cell of periportal hepatic sinusoid Endothelial cell of pericentral hepatic sinusoid Blood vessel endothelial cell

Caudate lobe of liver

Young adult stage Prime adult stage

Normal

Female Male

10x 3' v2 10x 3' v3

Cell Nucleus

Mus musculus

Astrocyte Leptomeningeal cell Smooth muscle cell Gabaergic neuron Endothelial cell Glutamatergic neuron

Primary motor cortex

Prime adult stage

Normal

Female Male

Smart-seq v4

Cell

Microcebus murinus

M cell of gut Natural killer cell Dendritic cell Innate lymphoid cell Intestinal enteroendocrine cell T cell Intestinal tuft cell B cell Endothelial cell of artery Pericyte Conventional dendritic cell Endothelial cell of lymphatic vessel Neutrophil Lymphocyte Non-myelinating schwann cell Enterocyte of epithelium of small intestine Small intestine goblet cell Mature nk t cell Smooth muscle cell Cd4-positive, alpha-beta t cell Macrophage Cd8-positive, alpha-beta t cell Epithelial cell of small intestine Vascular associated smooth muscle cell Interstitial cell of cajal Capillary endothelial cell Basophil Vein endothelial cell Fibroblast Plasma cell Myeloid cell Eosinophil Mesothelial cell

Small intestine

Post-juvenile adult stage

Normal

Female Male

10x 3' v2 Smart-seq2

Cell

Homo sapiens

T cell Malignant cell Macrophage Blood vessel smooth muscle cell Blood vessel endothelial cell Fibroblast Plasma cell

Liver

44-year-old stage

Breast cancer

Female

Slide-seqv2

Mus musculus

Pancreatic d cell Leukocyte Pancreatic acinar cell Type b pancreatic cell Pancreatic stellate cell Endothelial cell Pancreatic pp cell Pancreatic ductal cell Pancreatic a cell

Pancreas

20-month-old stage and over 18-month-old stage

Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Oligodendrocyte

Cerebellum Hippocampal formation Entorhinal cortex Brain Caudate-putamen Upper layers of the cortex Hindbrain Midbrain Pons Forebrain Frontal cortex Lower layers of the cortex Hypothalamus Dorsal plus ventral thalamus Striatum Metencephalon Basal forebrain Midbrain tectum Cerebral subcortex Medulla oblongata Occipital cortex Cortex Cerebellar peduncular complex

10th week post-fertilization stage 14th week post-fertilization stage 9th week post-fertilization stage 11th week post-fertilization stage Carnegie stage 20 Carnegie stage 16 15th week post-fertilization stage Carnegie stage 22 Carnegie stage 18 13th week post-fertilization stage 12th week post-fertilization stage

Normal

10x 3' v2 10x 3' v3

Cell

Mus musculus

Notochordal cell Spinal cord interneuron Paraxial cell Gut endothelial cell Splanchnic mesodermal cell Hemangioblast Cardiac valve cell Endodermal cell Primitive red blood cell Midbrain dopaminergic neuron Premigratory neural crest cell Mesodermal cell Neuroplacodal cell Surface ectodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Mus musculus

Oligodendrocyte Astrocyte Microglial cell Oligodendrocyte precursor cell Gabaergic neuron Endothelial cell Glutamatergic neuron

Primary motor cortex

Prime adult stage

Normal

Female Male

Smart-seq v4

Nucleus

Homo sapiens

Endothelial cell of artery Lymphocyte Macrophage Blood vessel smooth muscle cell Microcirculation associated smooth muscle cell Fibroblast

Aorta

46-year-old stage

Normal

Male

Slide-seqv2

Homo sapiens

Near-projecting glutamatergic cortical neuron

Neocortex

Adult stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

A2 amacrine cell Glycinergic amacrine cell Starburst amacrine cell Amacrine cell

Retina

77-year-old stage 79-year-old stage 65-year-old stage 70-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Drosophila melanogaster

Larval optic neuroblast Type ii neuroblast

Insect embryonic/larval brain

Late third instar larval stage

Normal

10x genomics v2 10x genomics v3