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Cell Type
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
9,070 cells
•
Yan et al., 2020
Cell Atlas of The Human Fovea and Peripheral Retina
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal cone cell
+1
Retinal cone cell
Peripheral region of retina
+1
Peripheral region of retina
69-year-old stage
+6
69-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Retinal cone cell
Retinal rod cell
Tissue
Peripheral region of retina
Fovea centralis
Developmental stage
69-year-old stage
65-year-old stage
53-year-old stage
74-year-old stage
64-year-old stage
60-year-old stage
78-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
GSE148077
singlecell.broadinstitute.org
explore.data.humancellatlas.org
CELLxGENE
9,015 cells
•
Nowicki-Osuch et al., 2023
Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
Explore
h5ad
Homo sapiens
Homo sapiens
Iga plasma cell
+2
Iga plasma cell
Duodenum
+7
Duodenum
69-year-old stage
+24
69-year-old stage
Barrett esophagus
+3
Barrett esophagus
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Iga plasma cell
Igg plasma cell
Memory b cell
Tissue
Duodenum
Epithelium of rectum
Submucosal esophageal gland
Body of stomach
Cardia of stomach
Ascending colon epithelium
Esophagogastric junction
Lower esophagus
Developmental stage
69-year-old stage
34-year-old stage
42-year-old stage
43-year-old stage
53-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
29-year-old stage
56-year-old stage
55-year-old stage
50-year-old stage
51-year-old stage
57-year-old stage
74-year-old stage
80 year-old and over stage
58-year-old stage
67-year-old stage
77-year-old stage
45-year-old stage
62-year-old stage
41-year-old stage
63-year-old stage
83-year-old stage
27-year-old stage
Disease
Barrett esophagus
Normal
Gastric intestinal metaplasia
Gastritis
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
EGAD00001010074
github.com
CELLxGENE
8,982 cells
•
Kumar et al., 2023
A spatially resolved single-cell genomic atlas of the adult human breast
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
Endothelial cell of lymphatic vessel
Breast
Breast
Adult stage
+1
Adult stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Tissue
Breast
Developmental stage
Adult stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
github.com
breastatlas.org
GSE195665
explore.data.humancellatlas.org
CELLxGENE
8,978 cells
•
Jardine et al., 2021
Blood and immune development in human fetal bone marrow and Down syndrome
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+27
Neutrophil
Bone marrow
Bone marrow
Fifth lmp month stage
Fifth lmp month stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Endothelial tip cell
Erythrocyte
Pro-b cell
Endothelial cell of sinusoid
Mast cell
Plasmacytoid dendritic cell
Precursor b cell
Early lymphoid progenitor
Primitive red blood cell
Macrophage
Promonocyte
Common myeloid progenitor
Cd4-positive, alpha-beta t cell
Cd14-positive monocyte
Hematopoietic multipotent progenitor cell
Eosinophil
Megakaryocyte
Granulocyte monocyte progenitor cell
Progenitor cell
Promyelocyte
Immature b cell
Fraction a pre-pro b cell
Naive b cell
Basophil
Osteoclast
Dendritic cell
Cd16-negative, cd56-bright natural killer cell, human
Tissue
Bone marrow
Developmental stage
Fifth lmp month stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
fbm.cellatlas.io
haniffalab.com
Github:haniffalab/FCA_bone_marrow
ncbi.nlm.nih.gov
HumanCellAtlas:04ad400c-58cb-40a5-bc2b-2279e13a910b
ENA Project:PRJEB41514
ArrayExpress BioStudies:E-MTAB-10042
Single Cell Expression Atlas Experiment:E-CURD-112
Single Cell Expression Atlas Experiment:E-MTAB-9801
ArrayExpress BioStudies:E-MTAB-9801
ArrayExpress BioStudies:E-MTAB-9389
CELLxGENE
8,959 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Erythrocyte
Erythrocyte
Choroid plexus epithelium
+26
Choroid plexus epithelium
13th week post-fertilization stage
+11
13th week post-fertilization stage
Normal
Normal
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Erythrocyte
Tissue
Choroid plexus epithelium
Striatum
Medulla oblongata
Hindbrain
Telencephalon
Cortex
Midbrain
Dorsal plus ventral thalamus
Lower layers of the cortex
Frontal cortex
Entorhinal cortex
Midbrain tectum
Metencephalon
Basal forebrain
Cerebellum
Brain
Hypothalamus
Cerebellar peduncular complex
Upper layers of the cortex
Caudate-putamen
Hippocampal formation
Diencephalon
Pons
Cerebral subcortex
Occipital cortex
Forebrain
Head
Developmental stage
13th week post-fertilization stage
14th week post-fertilization stage
15th week post-fertilization stage
12th week post-fertilization stage
Carnegie stage 20
9th week post-fertilization stage
10th week post-fertilization stage
Carnegie stage 22
Carnegie stage 16
Carnegie stage 15
Carnegie stage 18
11th week post-fertilization stage
Disease
Normal
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Github
EGAD00001006049
CELLxGENE
8,945 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Bladder urothelial cell
+3
Bladder urothelial cell
Bladder lumen
Bladder lumen
4-week-old stage
+3
4-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Bladder urothelial cell
Endothelial cell
Bladder cell
Leukocyte
Tissue
Bladder lumen
Developmental stage
4-week-old stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
CELLxGENE
8,899 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
8,863 cells
•
Govek et al., 2022
Combined single-cell RNA-seq profiling and enhancer editing reveals critical spatiotemporal controls over thalamic nuclei formation in the murine embryo
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+2
Glutamatergic neuron
Diencephalon
Diencephalon
Theiler stage 22
Theiler stage 22
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Gabaergic neuron
Neural progenitor cell
Tissue
Diencephalon
Developmental stage
Theiler stage 22
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
CELLxGENE
8,847 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Plasma cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
8,841 cells
•
Mannens et al., 2024
Chromatin accessibility during human first-trimester neurodevelopment
Explore
h5ad
Homo sapiens
Homo sapiens
Vascular leptomeningeal cell
+2
Vascular leptomeningeal cell
Medulla oblongata
+7
Medulla oblongata
13th week post-fertilization stage
+4
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Vascular leptomeningeal cell
Pericyte
Vascular associated smooth muscle cell
Tissue
Medulla oblongata
Hindbrain
Telencephalon
Midbrain
Cerebellum
Brain
Diencephalon
Pons
Developmental stage
13th week post-fertilization stage
12th week post-fertilization stage
9th week post-fertilization stage
10th week post-fertilization stage
Embryonic stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
EGAS00001007472
Github
CELLxGENE
8,811 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Large mucus secreting cholangiocyte
+2
Large mucus secreting cholangiocyte
Left lobe of liver
+3
Left lobe of liver
37-year-old stage
+41
37-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v1
+2
10x 5' v1
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Large mucus secreting cholangiocyte
Cholangiocyte
Intrahepatic cholangiocyte
Tissue
Left lobe of liver
Right lobe of liver
Caudate lobe of liver
Liver
Developmental stage
37-year-old stage
21-year-old stage
65-year-old stage
26-year-old stage
Sixth decade stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
39-year-old stage
44-year-old stage
56-year-old stage
Fifth decade stage
55-year-old stage
50-year-old stage
80-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
Third decade stage
49-year-old stage
Seventh decade stage
59-year-old stage
Adult stage
67-year-old stage
Late adult stage
32-year-old stage
77-year-old stage
33-year-old stage
45-year-old stage
62-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
Fourth decade stage
Eighth decade stage
Prime adult stage
Ninth decade stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
CELLxGENE
8,804 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
9-month-old stage
9-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
9-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
1
2
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