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Disease
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Technology
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Cell
893
Nucleus
659
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0
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
Bgee
7,517 cells
•
Cattenoz et al., 2020
Temporal specificity and heterogeneity of <i>Drosophila<i> immune cells
Explore
scRNA-Seq droplet-based processed expression values per cell population in Drosophila melanogaster (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Drosophila melanogaster (h5ad)
Drosophila melanogaster
Drosophila melanogaster
Plasmatocyte
+2
Plasmatocyte
Embryonic/larval hemolymph
Embryonic/larval hemolymph
Wandering third instar larval stage
Wandering third instar larval stage
Normal
Normal
Female
Female
10x genomics v2
10x genomics v2
Organism
Drosophila melanogaster
Cell type
Plasmatocyte
Embryonic/larval crystal cell
Lamellocyte
Tissue
Embryonic/larval hemolymph
Developmental stage
Wandering third instar larval stage
Disease
Normal
Sex
Female
Technology
10x genomics v2
Suspension type
Related Links
ncbi.nlm.nih.gov
CELLxGENE
7,513 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Tissue-resident macrophage
+14
Tissue-resident macrophage
Testis
Testis
60-year-old stage
60-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Tissue-resident macrophage
B cell
Peritubular myoid cell
Male germ cell
Monocyte
Cd4-positive, alpha-beta t cell
Macrophage
Cd8-positive, alpha-beta t cell
Stromal cell
Endothelial cell
Spermatocyte
Spermatogonium
Spermatid
Mast cell
Leydig cell
Tissue
Testis
Developmental stage
60-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
UCSC Cell Browser:tabula-sapiens
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
DOI:10.1101/2024.12.03.626516
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
CELLxGENE
7,506 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Gabaergic neuron
Gabaergic neuron
Superior frontal gyrus
Superior frontal gyrus
82-year-old stage
+7
82-year-old stage
Alzheimer disease
+1
Alzheimer disease
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Gabaergic neuron
Tissue
Superior frontal gyrus
Developmental stage
82-year-old stage
60-year-old stage
77-year-old stage
72-year-old stage
80 year-old and over stage
87-year-old stage
50-year-old stage
71-year-old stage
Disease
Alzheimer disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GEO series:GSE147528
kampmannlab.ucsf.edu
synapse.org:#!Synapse:syn21788402/wiki/601825
HumanCellAtlas:7dcffc32-7c82-4396-9a4f-88b5579bfe8a
CELLxGENE
7,505 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
Hepatocyte
+7
Hepatocyte
Liver
Liver
41-year-old stage
41-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Hepatocyte
T cell
Monocyte
Malignant cell
Mature nk t cell
Macrophage
Endothelial cell
Fibroblast
Tissue
Liver
Developmental stage
41-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
7,417 cells
•
Gray et al., 2024
Human γδ T cells in diverse tissues exhibit site-specific maturation dynamics across the life span
Explore
h5ad
Homo sapiens
Homo sapiens
Gamma-delta t cell
Gamma-delta t cell
Lung
+4
Lung
38-year-old stage
+22
38-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Gamma-delta t cell
Tissue
Lung
Thoracic lymph node
Spleen
Mesenteric lymph node
Jejunum
Developmental stage
38-year-old stage
54-year-old stage
21-year-old stage
19-year-old stage
64-year-old stage
25-year-old stage
56-year-old stage
68-year-old stage
33-year-old stage
75-year-old stage
74-year-old stage
48-year-old stage
27-year-old stage
67-year-old stage
Sixth decade stage
52-year-old stage
44-year-old stage
23-year-old stage
20-year-old stage
Third decade stage
50-year-old stage
73-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE240858
CELLxGENE
7,389 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
Bgee
7,359 cells
•
Murat et al., 2022
The molecular evolution of spermatogenesis across mammals
Explore
scRNA-Seq droplet-based processed expression values per cell population in Gorilla gorilla (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Gorilla gorilla (h5ad)
Gorilla gorilla
Gorilla gorilla
Sertoli cell
+7
Sertoli cell
Testis
Testis
Normal
Normal
Male
Male
10x genomics v2
10x genomics v2
Organism
Gorilla gorilla
Cell type
Sertoli cell
Obsolete somatic cell
Late spermatid
Cell
Spermatocyte
Spermatogonium
Male germ line stem cell
Early spermatid
Tissue
Testis
Developmental stage
Disease
Normal
Sex
Male
Technology
10x genomics v2
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
7,358 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of artery
+6
Endothelial cell of artery
Forebrain meninges
+2
Forebrain meninges
Carnegie stage 21
+8
Carnegie stage 21
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of artery
Embryonic blood vessel endothelial progenitor cell
Endothelial cell of arteriole
Tip cell
Endothelial cell
Capillary endothelial cell
Vein endothelial cell
Tissue
Forebrain meninges
Brain meninx
Meninx
Developmental stage
Carnegie stage 21
10th week post-fertilization stage
9th week post-fertilization stage
Carnegie stage 20
Carnegie stage 16
Carnegie stage 23
Carnegie stage 18
13th week post-fertilization stage
12th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:linnarsson-lab/human-meninges-development
CELLxGENE
7,348 cells
•
Liang et al., 2023
A multi-omics atlas of the human retina at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Retina horizontal cell
Retina horizontal cell
Fovea centralis
+2
Fovea centralis
83-year-old stage
+4
83-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retina horizontal cell
Tissue
Fovea centralis
Macula lutea proper
Peripheral region of retina
Developmental stage
83-year-old stage
78-year-old stage
84-year-old stage
65-year-old stage
73-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
UCSC Cell Browser:retina-atac
HumanCellAtlas:9c20a245-f2c0-43ae-82c9-2232ec6b594f
GEO series:GSE226108
Single Cell Portal
7,340 cells
Explore
Mus musculus
Mus musculus
Obsolete excitatory neuron
+2
Obsolete excitatory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete excitatory neuron
Obsolete inhibitory neuron
Astrocyte of the cerebellum
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD710) (section 133)
Corresponding registered brain section (MD710) (section 134)
Corresponding registered brain section (MD710) (section 135)
Corresponding registered brain section (MD710) (section 136)
Corresponding registered brain section (MD710) (section 137)
Corresponding registered brain section (MD710) (section 138)
CELLxGENE
7,334 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+13
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
Bgee
7,318 cells
•
Murat et al., 2022
The molecular evolution of spermatogenesis across mammals
Explore
scRNA-Seq droplet-based processed expression values per cell population in Callithrix jacchus (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Callithrix jacchus (h5ad)
Callithrix jacchus
Callithrix jacchus
Sertoli cell
+7
Sertoli cell
Testis
Testis
Late adult stage
Late adult stage
Normal
Normal
Male
Male
10x genomics v2
10x genomics v2
Organism
Callithrix jacchus
Cell type
Sertoli cell
Obsolete somatic cell
Late spermatid
Cell
Spermatocyte
Spermatogonium
Male germ line stem cell
Early spermatid
Tissue
Testis
Developmental stage
Late adult stage
Disease
Normal
Sex
Male
Technology
10x genomics v2
Suspension type
Related Links
ebi.ac.uk
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