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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
9,626 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+17
Neutrophil
Heart left ventricle
Heart left ventricle
Seventh decade stage
Seventh decade stage
Normal
Normal
Female
+1
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Neutrophil
Endothelial cell of lymphatic vessel
Mast cell
Endothelial cell of artery
Capillary endothelial cell
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Adipocyte
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Glial cell
Plasma cell
Vein endothelial cell
Cd14-positive monocyte
Mesothelial cell
Monocyte
Regular ventricular cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Female
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
9,619 cells
•
Lim et al., 2025
A novel human fetal lung-derived alveolar organoid model reveals mechanisms of surfactant protein C maturation relevant to interstitial lung disease
Explore
h5ad
Homo sapiens
Homo sapiens
Pulmonary neuroendocrine cell
+4
Pulmonary neuroendocrine cell
Lung
Lung
Normal
Normal
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Pulmonary neuroendocrine cell
Basal cell
Respiratory tract epithelial cell
Lung multiciliated epithelial cell
Pulmonary alveolar type 2 cell
Tissue
Lung
Developmental stage
Disease
Normal
Sex
Technology
10x 5' v1
Suspension type
Cell
Related Links
github.com
GSE237359
ebi.ac.uk
CELLxGENE
9,615 cells
•
Choksi et al., 2024
An alternative cell cycle coordinates multiciliated cell differentiation
Explore
h5ad
Mus musculus
Mus musculus
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Mature stage
Mature stage
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Tracheal epithelial cell
Tissue
Tracheal epithelial cell
Developmental stage
Mature stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE228110
github.com
zenodo.org
zenodo.org
zenodo.org
CELLxGENE
9,563 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Peridermal cell
+5
Peridermal cell
Pharyngeal arch system
Pharyngeal arch system
Theiler stage 22
+5
Theiler stage 22
Normal
Normal
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Peridermal cell
Ectodermal cell
Neuroplacodal cell
Myeloid cell
Pituitary gland cell
Mesenchymal cell
Tissue
Pharyngeal arch system
Developmental stage
Theiler stage 22
Theiler stage 17
Theiler stage 19
Theiler stage 20
Theiler stage 21
Theiler stage 23
Disease
Normal
Sex
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
zenodo.org
github.com
Human snRNA
Mouse snRNA
CELLxGENE
9,471 cells
•
Wiedemann et al., 2023
Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin
Explore
h5ad
Homo sapiens
Homo sapiens
Keratinocyte
Keratinocyte
Skin of body
+1
Skin of body
65-year-old stage
+3
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Keratinocyte
Tissue
Skin of body
Skin epidermis
Developmental stage
65-year-old stage
39-year-old stage
56-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
skingenes.org
GSE202352
explore.data.humancellatlas.org
CELLxGENE
9,454 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Plasma cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
9,446 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Caudal ganglionic eminence derived interneuron
Caudal ganglionic eminence derived interneuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Caudal ganglionic eminence derived interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
9,422 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of hepatic sinusoid
+5
Endothelial cell of hepatic sinusoid
Caudate lobe of liver
Caudate lobe of liver
Late adult stage
+2
Late adult stage
Normal
Normal
Female
+1
Female
10x 5' v1
+1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of hepatic sinusoid
Hepatocyte
Endothelial cell of periportal hepatic sinusoid
Endothelial cell of artery
Endothelial cell of pericentral hepatic sinusoid
Vein endothelial cell
Tissue
Caudate lobe of liver
Developmental stage
Late adult stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
MacParland et al. (2018) Nature
GSE240429
GSE115469
GSE243977
GSE247128
GSE245620
CELLxGENE
9,422 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+7
Blood vessel endothelial cell
Liver
Liver
46-year-old stage
46-year-old stage
Breast cancer
Breast cancer
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Endothelial cell
Mature nk t cell
Blood vessel smooth muscle cell
Macrophage
Malignant cell
Monocyte
Fibroblast
Tissue
Liver
Developmental stage
46-year-old stage
Disease
Breast cancer
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
humantumoratlas.org
phs002371
CELLxGENE
9,409 cells
•
Travaglini et al., 2020
A molecular cell atlas of the human lung from single-cell RNA sequencing
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+39
Neutrophil
Lung
+1
Lung
75-year-old stage
+2
75-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Club cell
Cd1c-positive myeloid dendritic cell
Dendritic cell, human
Natural killer cell
Endothelial cell of lymphatic vessel
Endothelial cell
Mature nk t cell
Pulmonary ionocyte
Pulmonary neuroendocrine cell
Basal cell
Effector memory cd4-positive, alpha-beta t cell
Lung goblet cell
Endothelial cell of artery
Capillary endothelial cell
Classical monocyte
Intermediate monocyte
Plasmacytoid dendritic cell, human
Epithelial cell
Lung multiciliated epithelial cell
Lymphocyte
Naive thymus-derived cd8-positive, alpha-beta t cell
Pulmonary alveolar type 1 cell
Bronchial smooth muscle cell
Respiratory basal cell
Alveolar macrophage
Plasma cell
Vein endothelial cell
Pulmonary interstitial fibroblast
B cell
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Myeloid leukocyte
Vascular associated smooth muscle cell
Myofibroblast cell
Fibroblast
Dendritic cell
Pulmonary alveolar type 2 cell
Effector memory cd8-positive, alpha-beta t cell
Non-classical monocyte
Tissue
Lung
Blood
Developmental stage
75-year-old stage
51-year-old stage
46-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
EGAS00001004344
PRJNA632939
Human Lung Cell Atlas
Synapse
HLCA Github
cells.ucsc.edu
explore.data.humancellatlas.org
Single Cell Portal
9,391 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+2
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Brain microvascular endothelial cell
Obsolete excitatory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD736) (section 112)
Corresponding registered brain section (MD736) (section 113)
Corresponding registered brain section (MD736) (section 115)
CELLxGENE
9,362 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Chest wall
Chest wall
54-year-old stage
54-year-old stage
Breast cancer
Breast cancer
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
T cell
Blood vessel endothelial cell
Blood vessel smooth muscle cell
Macrophage
Malignant cell
Cell of skeletal muscle
Fibroblast
Tissue
Chest wall
Developmental stage
54-year-old stage
Disease
Breast cancer
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
humantumoratlas.org
phs002371
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