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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
Single Cell Portal
10,086 cells
Explore
Mus musculus
Mus musculus
Granulocyte
+8
Granulocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Granulocyte
Erythrocyte
Endothelial cell
Preosteoblast
Smooth muscle cell
Macrophage
Calvarial osteoblast
B cell
Chondrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
10,019 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
Smooth muscle cell
+1
Smooth muscle cell
Thymus
Thymus
13th week post-fertilization stage
+11
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 5' v2
+3
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Smooth muscle cell
Pericyte
Tissue
Thymus
Developmental stage
13th week post-fertilization stage
3-month-old stage
14th week post-fertilization stage
15th week post-fertilization stage
20th week post-fertilization stage
17th week post-fertilization stage
12th week post-fertilization stage
6-month-old stage
18th week post-fertilization stage
10-month-old stage
Newborn stage (0-28 days)
24th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
CELLxGENE
10,016 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+7
Blood vessel endothelial cell
Liver
Liver
46-year-old stage
46-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Endothelial cell
Mature nk t cell
Blood vessel smooth muscle cell
Macrophage
Malignant cell
Monocyte
Fibroblast
Tissue
Liver
Developmental stage
46-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
humantumoratlas.org
phs002371
CELLxGENE
10,008 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+22
T cell
Ovary
Ovary
12-month-old stage
12-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Plasma cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
12-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
Single Cell Portal
10,006 cells
Explore
Macaca fascicularis
Macaca fascicularis
T cell
+10
T cell
Tuberculosis
Tuberculosis
Seq-well
Seq-well
Organism
Macaca fascicularis
Cell type
T cell
Neutrophil
Club cell
Endothelial cell
Mast cell
Plasmacytoid dendritic cell, human
Macrophage
Plasma cell
B cell
Fibroblast
Pulmonary alveolar type 2 cell
Tissue
Developmental stage
Disease
Tuberculosis
Sex
Technology
Seq-well
Suspension type
CELLxGENE
9,958 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Liver
Liver
44-year-old stage
44-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Blood vessel endothelial cell
Mature nk t cell
Blood vessel smooth muscle cell
Macrophage
Plasma cell
Malignant cell
B cell
Fibroblast
Tissue
Liver
Developmental stage
44-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
humantumoratlas.org
phs002371
CELLxGENE
9,957 cells
•
Arutyunyan et al., 2023
Spatial multiomics map of trophoblast development in early pregnancy
Explore
h5ad
Homo sapiens
Homo sapiens
Extravillous trophoblast
+1
Extravillous trophoblast
Trophoblast cell
Trophoblast cell
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Extravillous trophoblast
Placental villous trophoblast
Tissue
Trophoblast cell
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
Online web portal
scRNA-seq and snRNA-seq of primary tissue (E-MTAB-12421)
multiome snRNA-seq and snATAC-seq (E-MTAB-12595)
scRNA-seq and snRNA-seq of historical placental beds(EGAD00001010037)
multiome snRNA-seq and snATAC-seq of historical placental beds(EGAD00001010038)
scRNA-seq and snRNA-seq of TSCs(EGAD00001010017)
Image datasets
scRNA-seq and snucRNA-seq of human primary trophoblast organoids (PTO) and trophoblast stem cells (TSCs) differentiation into extravillous trophoblast organoids (EVTs) (E-MTAB-12650)
Spatial transcriptomics of human implantation sites, placenta and decidua (E-MTAB-12698)
CELLxGENE
9,932 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+2
Endothelial cell
Subthalamic nucleus
+87
Subthalamic nucleus
42-year-old stage
+3
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Endothelial cell
Pericyte
Vascular associated smooth muscle cell
Tissue
Subthalamic nucleus
Medial geniculate body
Brodmann (1909) area 25
Lateral amygdaloid nucleus
Anterior nuclear group
Corticomedial nuclear complex
Pontine reticular formation
Temporal fusiform gyrus
Brodmann (1909) area 19
Centromedian nucleus of thalamus
Intralaminar nuclear group
Medial dorsal nucleus of thalamus
Parabrachial nucleus
Primary visual cortex
Claustrum of brain
Inferior temporal gyrus
Rostral ca3
Nucleus of medulla oblongata
Red nucleus
Subicular complex
Pontine tegmentum
Pontine nuclear group
Globus pallidus
Midbrain nucleus
Piriform cortex
Hippocampal field
Lateral nuclear group of thalamus
Brodmann (1909) area 13
Middle temporal gyrus
Central amygdaloid nucleus
Ventral anterior nucleus of thalamus
Septal nuclear complex
Brodmann (1909) area 35
Cerebellar nuclear complex
Median tuberal portion
Extrastriate cortex
Epithalamus
Dorsal tegmental nucleus
Brodmann (1909) area 38
Lateral entorhinal cortex
Supraoptic nucleus
Brodmann (1909) area 32
Medial entorhinal cortex
Midbrain tectum
Inferior olivary complex
Brodmann (1909) area 40
Inferior frontal gyrus
Substantia nigra
Agranular insular cortex
Brodmann (1909) area 43
Nucleus accumbens
Cerebrocerebellum
Gray matter of midbrain
Substantia innominata
Anterior cortical amygdaloid nucleus
Primary somatosensory cortex
Brodmann (1909) area 14
Anterior olfactory nucleus
Accessory basal amygdaloid nucleus
Pulvinar nucleus
Primary auditory cortex
Hypothalamus
Brodmann (1909) area 23
Primary motor cortex
Brodmann (1909) area 24
Brodmann (1909) area 46
Medial zone of hypothalamus
Posterior parahippocampal gyrus
Basolateral amygdaloid nuclear complex
Perirhinal cortex
Granular insular cortex
Cerebellar vermis
Spinal cord
Retrosplenial region
Cuneus cortex
Dentate gyrus of hippocampal formation
Lateral posterior nucleus of thalamus
Mammillary body
Superior temporal gyrus
Body of caudate nucleus
Uncal ca1
Bed nucleus of stria terminalis
Superior parietal cortex
Lateral geniculate body
Putamen
Pretectal region
Nucleus of dorsal thalamus
Preoptic area
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
Bgee
9,926 cells
•
Murat et al., 2022
The molecular evolution of spermatogenesis across mammals
Explore
scRNA-Seq droplet-based processed expression values per cell population in Monodelphis domestica (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Monodelphis domestica (h5ad)
Monodelphis domestica
Monodelphis domestica
Early spermatid
+5
Early spermatid
Testis
Testis
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
10x genomics v2
10x genomics v2
Organism
Monodelphis domestica
Cell type
Early spermatid
Sertoli cell
Late spermatid
Obsolete somatic cell
Spermatocyte
Spermatogonium
Tissue
Testis
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
10x genomics v2
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
9,913 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Plasma cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
9,876 cells
•
Yao et al., 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+8
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Snmc-seq2
Snmc-seq2
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Glutamatergic neuron
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Smooth muscle cell
Microglial cell
Leptomeningeal cell
Astrocyte
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Snmc-seq2
Suspension type
Nucleus
Related Links
Methyl-C sequencing of single cell nuclei: snmC-seq2
Fresh Frozen Mouse Brain Preparation (for Single Nuclei Sequencing)
assets.nemoarchive.org
CELLxGENE
9,876 cells
•
Yao et al., 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+8
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Snmc-seq2
Snmc-seq2
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Glutamatergic neuron
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Smooth muscle cell
Microglial cell
Leptomeningeal cell
Astrocyte
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Snmc-seq2
Suspension type
Nucleus
Related Links
Methyl-C sequencing of single cell nuclei: snmC-seq2
Fresh Frozen Mouse Brain Preparation (for Single Nuclei Sequencing)
assets.nemoarchive.org
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