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Technology
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Cell
893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Most cells
Fewest cells
2339
datasets
CELLxGENE
9,932 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Pericyte
+2
Pericyte
Brodmann (1909) area 13
+87
Brodmann (1909) area 13
42-year-old stage
+3
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Pericyte
Vascular associated smooth muscle cell
Endothelial cell
Tissue
Brodmann (1909) area 13
Brodmann (1909) area 14
Brodmann (1909) area 19
Brodmann (1909) area 23
Brodmann (1909) area 24
Brodmann (1909) area 25
Brodmann (1909) area 32
Brodmann (1909) area 35
Brodmann (1909) area 38
Brodmann (1909) area 40
Brodmann (1909) area 43
Brodmann (1909) area 46
Accessory basal amygdaloid nucleus
Agranular insular cortex
Anterior cortical amygdaloid nucleus
Anterior nuclear group
Anterior olfactory nucleus
Basolateral amygdaloid nuclear complex
Bed nucleus of stria terminalis
Body of caudate nucleus
Central amygdaloid nucleus
Centromedian nucleus of thalamus
Cerebellar nuclear complex
Cerebellar vermis
Cerebrocerebellum
Claustrum of brain
Corticomedial nuclear complex
Cuneus cortex
Dentate gyrus of hippocampal formation
Dorsal tegmental nucleus
Epithalamus
Extrastriate cortex
Globus pallidus
Granular insular cortex
Gray matter of midbrain
Hippocampal field
Hypothalamus
Inferior frontal gyrus
Inferior olivary complex
Inferior temporal gyrus
Intralaminar nuclear group
Lateral amygdaloid nucleus
Lateral entorhinal cortex
Lateral geniculate body
Lateral nuclear group of thalamus
Lateral posterior nucleus of thalamus
Mammillary body
Medial dorsal nucleus of thalamus
Medial entorhinal cortex
Medial geniculate body
Medial zone of hypothalamus
Median tuberal portion
Midbrain nucleus
Midbrain tectum
Middle temporal gyrus
Nucleus accumbens
Nucleus of dorsal thalamus
Nucleus of medulla oblongata
Parabrachial nucleus
Perirhinal cortex
Piriform cortex
Pontine nuclear group
Pontine reticular formation
Pontine tegmentum
Posterior parahippocampal gyrus
Preoptic area
Pretectal region
Primary auditory cortex
Primary motor cortex
Primary somatosensory cortex
Primary visual cortex
Pulvinar nucleus
Putamen
Red nucleus
Retrosplenial region
Rostral ca3
Septal nuclear complex
Spinal cord
Subicular complex
Substantia innominata
Substantia nigra
Subthalamic nucleus
Superior parietal cortex
Superior temporal gyrus
Supraoptic nucleus
Temporal fusiform gyrus
Uncal ca1
Ventral anterior nucleus of thalamus
Developmental stage
42-year-old stage
60-year-old stage
50-year-old stage
29-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
Bgee
9,926 cells
•
Murat et al., 2022
The molecular evolution of spermatogenesis across mammals
Explore
scRNA-Seq droplet-based processed expression values per cell population in Monodelphis domestica (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Monodelphis domestica (h5ad)
Monodelphis domestica
Monodelphis domestica
Sertoli cell
+5
Sertoli cell
Testis
Testis
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
10x genomics v2
10x genomics v2
Organism
Monodelphis domestica
Cell type
Sertoli cell
Obsolete somatic cell
Late spermatid
Spermatocyte
Spermatogonium
Early spermatid
Tissue
Testis
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
10x genomics v2
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
9,876 cells
•
Yao et al., 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Oligodendrocyte
+8
Oligodendrocyte
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Snmc-seq2
Snmc-seq2
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Microglial cell
Oligodendrocyte precursor cell
Leptomeningeal cell
Smooth muscle cell
Gabaergic neuron
Endothelial cell
Glutamatergic neuron
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Snmc-seq2
Suspension type
Nucleus
Related Links
DOI:10.17504/protocols.io.pjvdkn6
DOI:10.17504/protocols.io.bcbrism6
NeMo archive:dat-ch1nqb7
CELLxGENE
9,876 cells
•
Yao et al., 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Oligodendrocyte
+8
Oligodendrocyte
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Male
Male
Snmc-seq2
Snmc-seq2
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Microglial cell
Oligodendrocyte precursor cell
Leptomeningeal cell
Smooth muscle cell
Gabaergic neuron
Endothelial cell
Glutamatergic neuron
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Male
Technology
Snmc-seq2
Suspension type
Nucleus
Related Links
DOI:10.17504/protocols.io.pjvdkn6
DOI:10.17504/protocols.io.bcbrism6
NeMo archive:dat-ch1nqb7
CELLxGENE
9,857 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Regular atrial cardiac myocyte
Regular atrial cardiac myocyte
Sinoatrial node
Sinoatrial node
Seventh decade stage
+3
Seventh decade stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Regular atrial cardiac myocyte
Tissue
Sinoatrial node
Developmental stage
Seventh decade stage
Fifth decade stage
Eighth decade stage
Third decade stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12919
ArrayExpress BioStudies:E-MTAB-12975
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
CELLxGENE
9,852 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+7
B cell
Respiratory airway
Respiratory airway
49-year-old stage
49-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Mature nk t cell
Erythrocyte
Ionocyte
Epithelial cell
Mast cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
49-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:fm7v43jrbk/2
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
CELLxGENE
9,841 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Sebocyte
+4
Sebocyte
Arm skin
+7
Arm skin
62-year-old stage
+23
62-year-old stage
Basal cell carcinoma
+1
Basal cell carcinoma
Female
+1
Female
10x 3' v2
+2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Sebocyte
Hair follicular keratinocyte
Basal cell of epidermis
Keratinocyte
Granular cell of epidermis
Tissue
Arm skin
Nose skin
Scalp
Skin of abdomen
Skin of cheek
Skin of external ear
Skin of forehead
Skin of temple
Developmental stage
62-year-old stage
66-year-old stage
54-year-old stage
59-year-old stage
25-year-old stage
91-year-old stage
56-year-old stage
24-year-old stage
86-year-old stage
80-year-old stage
77-year-old stage
63-year-old stage
39-year-old stage
27-year-old stage
78-year-old stage
81-year-old stage
23-year-old stage
85-year-old stage
90-year-old stage
53-year-old stage
69-year-old stage
73-year-old stage
51-year-old stage
70-year-old stage
Disease
Basal cell carcinoma
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
10x 3' v1
Suspension type
Cell
Related Links
spatial-skin-atlas.cellgeni.sanger.ac.uk
HumanCellAtlas:e49e556a-da5a-442a-b45c-8691b457623e
ArrayExpress BioStudies:E-MTAB-13085
ArrayExpress BioStudies:E-MTAB-13084
CELLxGENE
9,816 cells
•
Anderson-Crannage et al., 2023
Inflammation-mediated fibroblast activation and immune dysregulation in collagen VII-deficient skin
Explore
h5ad
Mus musculus
Mus musculus
Schwann cell
+10
Schwann cell
Autopod skin
Autopod skin
2-week-old stage
2-week-old stage
Epidermolysis bullosa
+1
Epidermolysis bullosa
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Schwann cell
Innate lymphoid cell
Pericyte
Neutrophil
Keratinocyte
Endothelial cell
Chondrocyte
Fibroblast of lymphatic vessel
Fibroblast
Professional antigen presenting cell
Mast cell
Tissue
Autopod skin
Developmental stage
2-week-old stage
Disease
Epidermolysis bullosa
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE222250
CELLxGENE
9,799 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Chest wall
Chest wall
54-year-old stage
54-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Cell of skeletal muscle
Malignant cell
Macrophage
Blood vessel smooth muscle cell
Blood vessel endothelial cell
Fibroblast
Tissue
Chest wall
Developmental stage
54-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
9,778 cells
•
Chan et al., 2021
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Goblet cell
+9
Goblet cell
Adrenal gland
+7
Adrenal gland
62-year-old stage
+24
62-year-old stage
Small cell lung carcinoma
+2
Small cell lung carcinoma
Female
+1
Female
10x 3' v2
+2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Goblet cell
Hepatocyte
Tuft cell
Club cell
Neuroendocrine cell
Basal cell
Ionocyte
Ciliated epithelial cell
Epithelial cell
Pulmonary alveolar epithelial cell
Tissue
Adrenal gland
Axilla
Bone spine
Brain
Liver
Lung
Lymph node
Pleural effusion
Developmental stage
62-year-old stage
64-year-old stage
68-year-old stage
55-year-old stage
82-year-old stage
57-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
74-year-old stage
76-year-old stage
78-year-old stage
72-year-old stage
67-year-old stage
47-year-old stage
81-year-old stage
79-year-old stage
44-year-old stage
84-year-old stage
65-year-old stage
85-year-old stage
69-year-old stage
73-year-old stage
70-year-old stage
71-year-old stage
Disease
Small cell lung carcinoma
Lung adenocarcinoma
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' transcription profiling
10x 3' v3
Suspension type
Cell
Related Links
data.humantumoratlas.org
dbGaP Study:phs002371
Single Cell Portal
9,740 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+5
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Obsolete excitatory neuron
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 223)
Corresponding registered brain section (MD720) (section 224)
Corresponding registered brain section (MD720) (section 225)
CELLxGENE
9,705 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Choroid plexus macrophage
+4
Choroid plexus macrophage
Brain meninx
+2
Brain meninx
Carnegie stage 21
+8
Carnegie stage 21
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Choroid plexus macrophage
Endothelial cell
Neural progenitor cell
Choroid plexus epithelial cell
Epithelial cell
Tissue
Brain meninx
Forebrain meninges
Meninx
Developmental stage
Carnegie stage 21
10th week post-fertilization stage
9th week post-fertilization stage
Carnegie stage 20
Carnegie stage 16
Carnegie stage 23
Carnegie stage 18
13th week post-fertilization stage
12th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:linnarsson-lab/human-meninges-development
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