Home
Data
Contribute
Stats
Resources
Metadata schema
Tools
Community
About
Contact us
Organism
0
Clear
Cell Type
0
Clear
Tissue
0
Clear
Developmental Stage
0
Clear
Disease
0
Clear
Sex
0
Clear
Technology
0
Clear
Suspension Type
0
Clear
Cell
893
Nucleus
659
Data Source
0
Clear
Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
13,909 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
42-year-old stage
+20
42-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
42-year-old stage
68-year-old stage
88-year-old stage
86-year-old stage
82-year-old stage
83-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
89-year-old stage
78-year-old stage
72-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
84-year-old stage
85-year-old stage
50-year-old stage
29-year-old stage
69-year-old stage
70-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
AD knowledge portal:syn26223298
CELLxGENE
13,905 cells
•
Choksi et al., 2024
An alternative cell cycle coordinates multiciliated cell differentiation
Explore
h5ad
Mus musculus
Mus musculus
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Mature stage
Mature stage
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Tracheal epithelial cell
Tissue
Tracheal epithelial cell
Developmental stage
Mature stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE228110
Zenodo record:10896100
Zenodo record:10896066
Zenodo record:10896071
Github:lb15/multiciliation_cycle
CELLxGENE
13,900 cells
•
van Zyl et al., 2022
Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types
Explore
h5ad
Homo sapiens
Homo sapiens
Secondary lens fiber
+3
Secondary lens fiber
Lens of camera-type eye
Lens of camera-type eye
33-year-old stage
+1
33-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Secondary lens fiber
Lens fiber cell
Anterior lens cell
Lens epithelial cell
Tissue
Lens of camera-type eye
Developmental stage
33-year-old stage
Adult stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE199013
BroadInstitute Single-Cell Portal:SCP1841/cell-atlas-of-the-human-ocular-anterior-segment-tissue-specific-and-shared-cell-types
HumanCellAtlas:16e99159-78bc-44aa-b479-55a5e903bf50
Single Cell Portal
13,861 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+5
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Astrocyte
Microglial cell
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 229)
Corresponding registered brain section (MD720) (section 230)
Corresponding registered brain section (MD720) (section 231)
CELLxGENE
13,843 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Colon goblet cell
+8
Colon goblet cell
Caecum
+3
Caecum
49-year-old stage
+8
49-year-old stage
Colorectal cancer
+1
Colorectal cancer
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Colon goblet cell
Tuft cell of colon
Secretory cell
Malignant cell
Colonocyte
Enteroendocrine cell of colon
Intestinal crypt stem cell of colon
Best4+ colonocyte
Early colonocyte
Tissue
Caecum
Liver
Sigmoid colon
Hepatic flexure of colon
Developmental stage
49-year-old stage
64-year-old stage
68-year-old stage
74-year-old stage
39-year-old stage
65-year-old stage
50-year-old stage
45-year-old stage
37-year-old stage
Disease
Colorectal cancer
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:dpeerlab/progressive-plasticity-crc-metastasis.git
CELLxGENE
13,822 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+9
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Mesangial cell
Kidney distal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
Single Cell Portal
13,805 cells
Explore
Oryctolagus cuniculus
Oryctolagus cuniculus
Large intestine goblet cell
+5
Large intestine goblet cell
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Oryctolagus cuniculus
Cell type
Large intestine goblet cell
Enterocyte of epithelium of large intestine
Intestinal crypt stem cell of large intestine
Transit amplifying cell
Enteroendocrine cell
Best4+ enterocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
ASAP
13,788 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Neuron
+6
Neuron
Male reproductive gland
Male reproductive gland
Day 2 of adulthood
Day 2 of adulthood
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Neuron
Muscle cell
Male accessory gland main cell
Hemocyte
Male accessory gland secondary cell
Spermatocyte
Spermatid
Tissue
Male reproductive gland
Developmental stage
Day 2 of adulthood
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-10519
Single Cell Portal
13,787 cells
Explore
Mus musculus
Mus musculus
Astrocyte
Astrocyte
Normal
Normal
Mixed sex
Mixed sex
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v2
Suspension type
CELLxGENE
13,782 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+15
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
Renal medulla
75-year-old stage
75-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Parietal epithelial cell
Pericyte
Kidney collecting duct principal cell
Blood vessel smooth muscle cell
Kidney loop of henle thin descending limb epithelial cell
Endothelial cell
Kidney loop of henle epithelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney connecting tubule epithelial cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
75-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
CELLxGENE
13,780 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+8
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
Renal medulla
64-year-old stage
64-year-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
64-year-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
Github:marshalljamie/Kidney-Slide-seq
ASAP
13,774 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Adult renal stem cell
+1
Adult renal stem cell
Malpighian tubule
Malpighian tubule
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Adult renal stem cell
Visceral muscle cell
Tissue
Malpighian tubule
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-10519
1
2
…
112
113
114
115
116
…
389
390
Close