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Technology
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Cell
934
Nucleus
679
Data Source
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
15,891 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Osteoblast
+32
Osteoblast
Limb bone
+2
Limb bone
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
Osteoblast
Neutrophil
Stromal cell
Endothelial cell of lymphatic vessel
Erythroid progenitor cell
Non-myelinating schwann cell
Endothelial cell
Mature nk t cell
Endothelial cell of sinusoid
Hematopoietic precursor cell
Cd8-positive, alpha-beta t cell
Preosteoblast
Tendon cell
Erythroid lineage cell
Capillary endothelial cell
Plasmacytoid dendritic cell
Megakaryocyte progenitor cell
Lymphocyte
Adipocyte
Macrophage
Myeloid cell
Plasma cell
Cd4-positive, alpha-beta t cell
B cell
Granulocyte monocyte progenitor cell
Monocyte
Vascular associated smooth muscle cell
Basophil
Conventional dendritic cell
Fibroblast
Myelinating schwann cell
Dendritic cell
Chondrocyte
Tissue
Limb bone
Vertebral column
Bone element
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
cells.ucsc.edu
Globus
ASAP
v8
15,891 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Organism
Microcebus murinus
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
ASAP
v5
15,889 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Nociceptive neuron
+6
Nociceptive neuron
Wing
Wing
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Nociceptive neuron
Glial cell
Gustatory receptor neuron
Hemocyte
Muscle cell
Mechanosensory neuron
Sensory neuron
Tissue
Wing
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
15,833 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Glutamatergic neuron
Glutamatergic neuron
Superior frontal gyrus
Superior frontal gyrus
87-year-old stage
+7
87-year-old stage
Normal
+1
Normal
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Glutamatergic neuron
Tissue
Superior frontal gyrus
Developmental stage
87-year-old stage
71-year-old stage
82-year-old stage
50-year-old stage
72-year-old stage
80 year-old and over stage
77-year-old stage
60-year-old stage
Disease
Normal
Alzheimer disease
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GSE147528
kampmannlab.ucsf.edu
Synapse
explore.data.humancellatlas.org
CELLxGENE
15,806 cells
•
Kim et al., 2024
Transcriptomic Analysis of Air–Liquid Interface Culture in Human Lung Organoids Reveals Regulators of Epithelial Differentiation
Explore
h5ad
Homo sapiens
Homo sapiens
Ciliated cell
+2
Ciliated cell
Lung
+1
Lung
Middle aged stage
+1
Middle aged stage
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Ciliated cell
Secretory cell
Basal cell
Tissue
Lung
Epithelial cell of lung
Developmental stage
Middle aged stage
Late adult stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE280502
CELLxGENE
15,772 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
Oligodendrocyte
Superior frontal gyrus
Superior frontal gyrus
87-year-old stage
+7
87-year-old stage
Normal
+1
Normal
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Tissue
Superior frontal gyrus
Developmental stage
87-year-old stage
71-year-old stage
82-year-old stage
50-year-old stage
72-year-old stage
80 year-old and over stage
77-year-old stage
60-year-old stage
Disease
Normal
Alzheimer disease
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GSE147528
kampmannlab.ucsf.edu
Synapse
explore.data.humancellatlas.org
CELLxGENE
15,755 cells
•
Scala et al., 2020
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+1
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
22-week-old stage
+18
22-week-old stage
Normal
Normal
Female
+1
Female
Patch-seq
+1
Patch-seq
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
22-week-old stage
9-week-old stage
13-week-old stage
26-week-old stage
12-week-old stage
20-week-old stage
14-week-old stage
Prime adult stage
29-week-old stage
19-week-old stage
25-week-old stage
11-week-old stage
7-week-old stage
6-week-old stage
10-week-old stage
23-week-old stage
17-week-old stage
16-week-old stage
8-week-old stage
Disease
Normal
Sex
Female
Male
Technology
Patch-seq
10x 3' v2
Suspension type
Cell
Related Links
toliaslab.org
assets.nemoarchive.org
CELLxGENE
15,703 cells
•
Duran et al., 2025
A statistical framework for inferring genetic requirements from embryo-scale single-cell sequencing experiments
Explore
h5ad
Danio rerio
Danio rerio
Hepatocyte
+6
Hepatocyte
Cloaca
+10
Cloaca
Pharyngula:prim-15
+9
Pharyngula:prim-15
Normal
Normal
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Danio rerio
Cell type
Hepatocyte
Hepatoblast
Epithelial cell
Enterocyte
Endodermal cell
Epithelial cell of exocrine pancreas
Epithelial cell of esophagus
Tissue
Cloaca
Liver primordium
Liver
Swim bladder
Intestinal epithelium
Intestine
Ectoderm-derived structure
Multicellular anatomical structure
Esophagus
Pancreas
Pancreatic epithelial bud
Developmental stage
Pharyngula:prim-15
Hatching:long-pec
Larval:protruding-mouth
Pharyngula:prim-25
Segmentation:26+ somites
Segmentation:14-19 somites
Hatching:pec-fin
Segmentation:20-25 somites
Pharyngula:high-pec
Pharyngula:prim-5
Disease
Normal
Sex
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GSE295164
Processed Data
Saunders el al. (2023) Nature
CELLxGENE
15,684 cells
•
Horeth et al., 2023
High-Resolution Transcriptomic Landscape of the Human Submandibular Gland
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+15
T cell
Submandibular gland
Submandibular gland
48-year-old stage
+1
48-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Seromucus secreting cell
Erythrocyte
Endothelial cell
Striated cell of salivary gland
Serous secreting cell
Basal cell
Schwann cell
Ionocyte
Intercalated cell of salivary gland
Myoepithelial cell
Macrophage
B cell
Mucus secreting cell
Myofibroblast cell
Fibroblast
Tissue
Submandibular gland
Developmental stage
48-year-old stage
62-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE199209
CELLxGENE
15,669 cells
•
Tran et al., 2021
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Glutamatergic neuron
+8
Glutamatergic neuron
Anterior cingulate cortex
Anterior cingulate cortex
52-year-old stage
+4
52-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Glutamatergic neuron
Oligodendrocyte precursor cell
Oligodendrocyte
Microglial cell
Vip gabaergic interneuron
Gabaergic interneuron
Pvalb gabaergic interneuron
Neuron
Astrocyte
Tissue
Anterior cingulate cortex
Developmental stage
52-year-old stage
54-year-old stage
68-year-old stage
51-year-old stage
59-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Globus
Github
Bgee
15,668 cells
•
Li et al., 2021
Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of human cornea
Explore
scRNA-Seq droplet-based processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Corneal epithelial cell
+4
Corneal epithelial cell
Corneo-scleral junction
Corneo-scleral junction
Third decade stage
Third decade stage
Normal
Normal
10x genomics v2
10x genomics v2
Organism
Homo sapiens
Cell type
Corneal epithelial cell
Stem cell
Obsolete non-terminally differentiated cell
Transit amplifying cell
Progenitor cell
Tissue
Corneo-scleral junction
Developmental stage
Third decade stage
Disease
Normal
Sex
Technology
10x genomics v2
Suspension type
Related Links
SRA Project:SRP269263
Single Cell Portal
15,620 cells
Explore
Mus musculus
Mus musculus
Endothelial cell
+4
Endothelial cell
Normal
Normal
Mixed sex
Mixed sex
10x 3' v1
+1
10x 3' v1
Organism
Mus musculus
Cell type
Endothelial cell
Epithelial cell
Mesenchymal cell
Neuron associated cell
Hematopoietic cell
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v1
10x 3' v2
Suspension type
1
2
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