Mus musculus

Kidney loop of henle thick ascending limb epithelial cell Kidney interstitial fibroblast Leukocyte Kidney proximal convoluted tubule epithelial cell Podocyte Kidney collecting duct principal cell Macrophage Blood vessel smooth muscle cell Endothelial cell Kidney collecting duct intercalated cell Mesangial cell Kidney distal convoluted tubule epithelial cell

Kidney

6-month-old stage

Autosomal dominant polycystic kidney disease

Male

Slide-seqv2

Homo sapiens

Natural killer cell Innate lymphoid cell Regulatory t cell B cell Cd4-positive, alpha-beta memory t cell Macrophage Circulating fibrocyte Hematopoietic precursor cell Mast cell Cd8-positive, alpha-beta memory t cell

Myometrium Endometrium

32-year-old stage 31-year-old stage 28-year-old stage 26-year-old stage Young adult stage 23-year-old stage 29-year-old stage 37-year-old stage

Normal

Female

10x 3' v2 10x 3' v3

Cell

Mus musculus

Kidney loop of henle thick ascending limb epithelial cell Kidney interstitial fibroblast Leukocyte Kidney proximal convoluted tubule epithelial cell Macula densa epithelial cell Podocyte Kidney collecting duct principal cell Macrophage Blood vessel smooth muscle cell Endothelial cell Kidney collecting duct intercalated cell Mesangial cell Kidney granular cell

Kidney

13-week-old stage

Diabetic kidney disease

Male

Slide-seqv2

Mus musculus

Natural killer cell Mature alpha-beta t cell Precursor b cell Early pro-b cell Naive b cell Granulocyte monocyte progenitor cell Granulocytopoietic cell Cd4-positive, alpha-beta t cell Macrophage Lymphoid lineage restricted progenitor cell Immature b cell Late pro-b cell Granulocyte Hematopoietic stem cell Promonocyte Basophil Megakaryocyte-erythroid progenitor cell

Bone marrow

20-month-old stage and over 18-month-old stage 3-month-old stage

Normal

Female Male

Smart-seq2

Cell

Homo sapiens

Kidney loop of henle thick ascending limb epithelial cell Kidney interstitial fibroblast Leukocyte Kidney proximal convoluted tubule epithelial cell Podocyte Kidney collecting duct principal cell Macrophage Blood vessel smooth muscle cell Endothelial cell Kidney collecting duct intercalated cell Mesangial cell Kidney distal convoluted tubule epithelial cell

Cortex of kidney

62-year-old stage

Normal

Male

Slide-seqv2

Homo sapiens

Memory b cell

Rheumatoid arthritis

10x 5' v1

Homo sapiens

Purkinje cell Progenitor cell Cerebellar granule cell precursor Cerebellar neuron

Cerebellum

Fetal stage

Normal

Female Male

10x 3' v3 Parse evercode whole transcriptome v2

Cell

Homo sapiens

Cerebellar inhibitory gabaergic interneuron

Posterior parahippocampal gyrus Red nucleus Substantia nigra Dorsal tegmental nucleus Pontine nuclear group Parabrachial nucleus Inferior olivary complex Medial dorsal nucleus of thalamus Globus pallidus Cerebellar nuclear complex Pontine tegmentum Bed nucleus of stria terminalis Primary motor cortex Medial zone of hypothalamus Hypothalamus Cerebellar vermis Gray matter of midbrain Midbrain nucleus Extrastriate cortex Epithalamus Midbrain tectum Pretectal region Cerebrocerebellum Pontine reticular formation Substantia innominata Nucleus of medulla oblongata Mammillary body Spinal cord Septal nuclear complex Lateral geniculate body

42-year-old stage 60-year-old stage 50-year-old stage 29-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Drosophila melanogaster

Muscle cell Hemocyte Adult alary muscle cell

Oenocyte

Day 5 of adulthood

Normal

Female Male

10x 3' v3

Homo sapiens

Oligodendrocyte Astrocyte T cell Medial ganglionic eminence derived interneuron Pvalb chandelier gabaergic interneuron Microglial cell Oligodendrocyte precursor cell Neuron Pericyte Committed oligodendrocyte precursor Monocyte Eccentric medium spiny neuron Cerebral cortex neuron Intratelencephalic-projecting glutamatergic cortical neuron Vascular associated smooth muscle cell Sst chodl gabaergic interneuron Hippocampal ca1-3 neuron Endothelial cell Caudal ganglionic eminence derived interneuron Fibroblast Lamp5 lhx6 neuron Near-projecting glutamatergic cortical neuron

Brodmann (1909) area 14

50-year-old stage

Normal

Male

10x 3' v3

Nucleus

Mus musculus

T cell B cell Oocyte Theca cell Luteal cell Stromal cell Endothelial cell Phagocyte Epithelial cell Granulosa cell

Ovary

9-month-old stage 3-month-old stage

Normal

Female

10x 3' v3

Cell

Homo sapiens

Macrophage

Adrenal gland Abdomen Chest Liver Neck Cervical lymph node Lymph node

3-year-old stage 18-month-old stage 16-month-old stage 4-year-old stage 5-year-old stage 7-year-old stage 6-month-old stage 13-year-old stage 15-month-old stage 2-year-old stage 12-year-old stage 21-month-old stage 12-month-old stage 20-month-old stage

Neuroblastoma

Female Male

10x 3' v3

Nucleus