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Tissue
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Disease
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Technology
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Cell
893
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
15,427 cells
•
Serizay et al., 2025
Cyclin switch tailors a cell cycle variant to orchestrate multiciliogenesis
Explore
h5ad
Mus musculus
Mus musculus
Neuron associated cell
+3
Neuron associated cell
Multiciliated ependymal cell
Multiciliated ependymal cell
Theiler stage 27
Theiler stage 27
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Neuron associated cell
Multiciliated ependymal cell
Deuterosomal cell
Radial glial cell
Tissue
Multiciliated ependymal cell
Developmental stage
Theiler stage 27
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
DOI:10.1016/j.celrep.2024.115117
DOI:10.5281/zenodo.14105247
GEO series:GSE201773
CELLxGENE
15,412 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Pvalb chandelier gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
42-year-old stage
+20
42-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Pvalb chandelier gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
42-year-old stage
68-year-old stage
88-year-old stage
86-year-old stage
82-year-old stage
83-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
89-year-old stage
78-year-old stage
72-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
84-year-old stage
85-year-old stage
50-year-old stage
29-year-old stage
69-year-old stage
70-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
AD knowledge portal:syn26223298
CELLxGENE
15,396 cells
•
Qiu et al., 2024
A single-cell time-lapse of mouse prenatal development from gastrula to birth
Explore
h5ad
Mus musculus
Mus musculus
Ciliated cell
+2
Ciliated cell
Embryo
Embryo
Theiler stage 12
+14
Theiler stage 12
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Ciliated cell
Ependymal cell
Choroid plexus epithelial cell
Tissue
Embryo
Developmental stage
Theiler stage 12
Theiler stage 21
Theiler stage 27
Theiler stage 20
Theiler stage 16
Theiler stage 15
Theiler stage 26
Theiler stage 23
Theiler stage 14
Theiler stage 19
Theiler stage 22
Theiler stage 24
Theiler stage 18
Theiler stage 17
Theiler stage 25
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GEO series:GSE186069
Ontogeny of Mouse, Graphed
GEO series:GSE228590
CELLxGENE
15,366 cells
•
Liu et al., 2022
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response
Explore
h5ad
Homo sapiens
Homo sapiens
Regulatory t cell
+8
Regulatory t cell
Lung
Lung
61-year-old stage
61-year-old stage
Renal cell carcinoma
Renal cell carcinoma
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Regulatory t cell
B cell
Malignant cell
Cd8-positive, alpha-beta t cell
Epithelial cell
Fibroblast
Plasma cell
Myeloid cell
Cd4-positive helper t cell
Tissue
Lung
Developmental stage
61-year-old stage
Disease
Renal cell carcinoma
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:soph-liu/Slide-TCR-seq
BroadInstitute Single-Cell Portal:SCP1348/slide-tcr-seq-data
Single Cell Portal
15,347 cells
Explore
Homo sapiens
Homo sapiens
Goblet cell
+6
Goblet cell
Disease
Disease
Seq-well
Seq-well
Organism
Homo sapiens
Cell type
Goblet cell
T cell
Enterocyte
Paneth cell
Enteroendocrine cell
Stem cell
Intestinal crypt stem cell
Tissue
Developmental stage
Disease
Disease
Sex
Technology
Seq-well
Suspension type
Single Cell Portal
15,342 cells
Explore
Mus musculus
Mus musculus
Neuron
Neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
15,243 cells
•
Wiedemann et al., 2023
Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin
Explore
h5ad
Homo sapiens
Homo sapiens
Melanocyte
+5
Melanocyte
Dermis
+2
Dermis
56-year-old stage
+3
56-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Melanocyte
Leukocyte
Pericyte
Keratinocyte
Endothelial cell
Skin fibroblast
Tissue
Dermis
Skin epidermis
Skin of body
Developmental stage
56-year-old stage
39-year-old stage
65-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
skingenes.org
GEO series:GSE202352
HumanCellAtlas:da74b507-60ee-4dd1-bd02-807bb051a337
CELLxGENE
15,216 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+8
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
Renal medulla
62-year-old stage
62-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
62-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
15,196 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+8
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
Renal medulla
54-year-old stage
54-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
54-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
15,177 cells
•
Tran et al., 2021
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+11
Oligodendrocyte
Amygdala
Amygdala
54-year-old stage
+4
54-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Astrocyte
T cell
Microglial cell
Oligodendrocyte precursor cell
Sst gabaergic interneuron
Mural cell
Endothelial cell
Pvalb gabaergic interneuron
Gabaergic interneuron
Glutamatergic neuron
Tac3-positive striatal interneuron
Tissue
Amygdala
Developmental stage
54-year-old stage
59-year-old stage
68-year-old stage
52-year-old stage
51-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
research.libd.org
Github:LieberInstitute/10xPilot_snRNAseq-human
CELLxGENE
15,161 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+10
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Mesangial cell
Kidney distal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
Github:marshalljamie/Kidney-Slide-seq
CELLxGENE
15,139 cells
•
Choksi et al., 2024
An alternative cell cycle coordinates multiciliated cell differentiation
Explore
h5ad
Mus musculus
Mus musculus
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Mature stage
Mature stage
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Tracheal epithelial cell
Tissue
Tracheal epithelial cell
Developmental stage
Mature stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE228110
Github:lb15/multiciliation_cycle
Zenodo record:10896066
Zenodo record:10896071
Zenodo record:10896100
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