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Technology
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Cell
893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
Sort
Most cells
Fewest cells
2339
datasets
CELLxGENE
14,285 cells
•
Ulrich et al., 2021
Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified by scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
Secretory cell
Secretory cell
Ampulla of fallopian tube
+3
Ampulla of fallopian tube
31-year-old stage
+3
31-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Secretory cell
Tissue
Ampulla of fallopian tube
Isthmus of fallopian tube
Fallopian tube
Fimbria of fallopian tube
Developmental stage
31-year-old stage
30-year-old stage
46-year-old stage
52-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
HumanCellAtlas:21ea8ddb-525f-4f1f-a820-31f0360399a2
GEO series:GSE178101
CELLxGENE
14,226 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+26
Oligodendrocyte
Medial geniculate body
Medial geniculate body
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Natural killer cell
Astrocyte
T cell
Medial ganglionic eminence derived interneuron
Pvalb chandelier gabaergic interneuron
Microglial cell
Oligodendrocyte precursor cell
Neuron
Ependymal cell
Pericyte
Committed oligodendrocyte precursor
Cerebellar granule cell
Intratelencephalic-projecting glutamatergic cortical neuron
Sst chodl gabaergic interneuron
Hippocampal ca1-3 neuron
Endothelial cell
Amygdala excitatory neuron
Caudal ganglionic eminence derived interneuron
Dentate gyrus granule cell
Thalamic excitatory neuron
Central nervous system macrophage
Midbrain-derived inhibitory neuron
Fibroblast
Lamp5 lhx6 neuron
Mammillary body neuron
Unipolar brush cell
Tissue
Medial geniculate body
Developmental stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
14,213 cells
•
Lazarescu et al., 2025
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of omentum tissue
Adipocyte of omentum tissue
Visceral fat
Visceral fat
34-year-old stage
+8
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Adipocyte of omentum tissue
Tissue
Visceral fat
Developmental stage
34-year-old stage
24-year-old stage
28-year-old stage
33-year-old stage
48-year-old stage
Adult stage
53-year-old stage
29-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.5281/zenodo.14001210
GEO series:GSE281356
HumanCellAtlas:df8eb7ce-3707-46af-b823-e081a562e954
ASAP
14,197 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Muscle cell
+3
Muscle cell
Leg
Leg
Day 2 of adulthood
+1
Day 2 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Muscle cell
Epithelial cell
Hemocyte
Mechanosensory neuron
Tissue
Leg
Developmental stage
Day 2 of adulthood
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-10519
CELLxGENE
14,186 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+16
Kidney loop of henle thick ascending limb epithelial cell
Renal medulla
Renal medulla
75-year-old stage
75-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Parietal epithelial cell
Pericyte
Kidney collecting duct principal cell
Blood vessel smooth muscle cell
Kidney loop of henle thin descending limb epithelial cell
Endothelial cell
Kidney loop of henle epithelial cell
Urothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney connecting tubule epithelial cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
75-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
grekalab.org
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
GEO series:GSE190094
CELLxGENE
14,177 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+3
Endothelial cell of lymphatic vessel
Prostate gland
Prostate gland
62-year-old stage
+14
62-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Endothelial cell of coronary artery
Endothelial cell
Vein endothelial cell
Tissue
Prostate gland
Developmental stage
62-year-old stage
54-year-old stage
59-year-old stage
64-year-old stage
46-year-old stage
68-year-old stage
60-year-old stage
75-year-old stage
63-year-old stage
61-year-old stage
72-year-old stage
45-year-old stage
69-year-old stage
70-year-old stage
71-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
CELLxGENE
14,140 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+22
Natural killer cell
Endocrine pancreas
+1
Endocrine pancreas
59-year-old stage
+2
59-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Pancreatic d cell
T cell
B cell
Non-classical monocyte
Neutrophil
Pancreatic acinar cell
Type b pancreatic cell
Classical monocyte
Monocyte
Mature nk t cell
Cd4-positive, alpha-beta t cell
Macrophage
Intermediate monocyte
Cd8-positive, alpha-beta t cell
Pancreatic stellate cell
Endothelial cell
Pancreatic pp cell
Pancreatic ductal cell
Fibroblast
Plasma cell
Mast cell
Pancreatic a cell
Tissue
Endocrine pancreas
Exocrine pancreas
Developmental stage
59-year-old stage
56-year-old stage
37-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
CZ BioHub Portal:tabula-sapiens-portal
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
AWS Open Data:tabula-sapiens
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
CELLxGENE
14,094 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+27
Oligodendrocyte
Gray matter of midbrain
Gray matter of midbrain
50-year-old stage
+1
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Natural killer cell
Astrocyte
T cell
Medial ganglionic eminence derived interneuron
Pvalb chandelier gabaergic interneuron
Microglial cell
Oligodendrocyte precursor cell
B cell
Neuron
Ependymal cell
Pericyte
Committed oligodendrocyte precursor
Monocyte
Cerebellar inhibitory gabaergic interneuron
Cerebral cortex neuron
Cerebellar granule cell
Intratelencephalic-projecting glutamatergic cortical neuron
Vascular associated smooth muscle cell
Endothelial cell
Amygdala excitatory neuron
Caudal ganglionic eminence derived interneuron
Medium spiny neuron
Thalamic excitatory neuron
Central nervous system macrophage
Midbrain-derived inhibitory neuron
Fibroblast
Lamp5 lhx6 neuron
Tissue
Gray matter of midbrain
Developmental stage
50-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
14,072 cells
•
Chan et al., 2021
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+3
Plasmacytoid dendritic cell
Lung
+7
Lung
62-year-old stage
+24
62-year-old stage
Small cell lung carcinoma
+2
Small cell lung carcinoma
Female
+1
Female
10x 3' v2
+2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
Conventional dendritic cell
Neutrophil
Classical monocyte
Tissue
Lung
Adrenal gland
Brain
Pleural effusion
Liver
Lymph node
Axilla
Bone spine
Developmental stage
62-year-old stage
64-year-old stage
68-year-old stage
55-year-old stage
82-year-old stage
57-year-old stage
75-year-old stage
80-year-old stage
77-year-old stage
74-year-old stage
76-year-old stage
78-year-old stage
72-year-old stage
67-year-old stage
47-year-old stage
81-year-old stage
79-year-old stage
44-year-old stage
84-year-old stage
65-year-old stage
85-year-old stage
69-year-old stage
73-year-old stage
70-year-old stage
71-year-old stage
Disease
Small cell lung carcinoma
Lung adenocarcinoma
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' transcription profiling
10x 3' v3
Suspension type
Cell
Related Links
data.humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
14,057 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Trigeminal neuron
Trigeminal neuron
Trigeminal ganglion
Trigeminal ganglion
8-week-old stage
8-week-old stage
Peripheral neuropathy
+1
Peripheral neuropathy
Female
+1
Female
Drop-seq
+4
Drop-seq
Cell
+1
Cell
Organism
Mus musculus
Cell type
Trigeminal neuron
Tissue
Trigeminal ganglion
Developmental stage
8-week-old stage
Disease
Peripheral neuropathy
Normal
Sex
Female
Male
Technology
Drop-seq
Indrop
Smart-seq3
10x 3' v3
Bd rhapsody whole transcriptome analysis
Suspension type
Cell
Nucleus
Related Links
DOI:10.3389/fncel.2022.885569
DOI:10.1371/journal.pone.0185543
DOI:10.1016/j.neuron.2022.03.003
DOI:10.1016/j.neuron.2020.07.026
DOI:10.7554/eLife.68457
DOI:10.7554/eLife.76063
DOI:10.1016/j.celrep.2021.109914
DOI:10.1038/s41586-019-1900-1
DOI:10.3389/fnmol.2022.1038539
DOI:10.1038/s41422-021-00479-9
CELLxGENE
14,010 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Kidney loop of henle thick ascending limb epithelial cell
+12
Kidney loop of henle thick ascending limb epithelial cell
Cortex of kidney
Cortex of kidney
65-year-old stage
65-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney interstitial fibroblast
Leukocyte
Kidney proximal convoluted tubule epithelial cell
Podocyte
Kidney collecting duct principal cell
Macrophage
Blood vessel smooth muscle cell
Endothelial cell
Kidney collecting duct intercalated cell
Mesangial cell
Kidney granular cell
Kidney distal convoluted tubule epithelial cell
Tissue
Cortex of kidney
Developmental stage
65-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
CELLxGENE
13,964 cells
•
Lazarescu et al., 2025
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of omentum tissue
Adipocyte of omentum tissue
Visceral fat
Visceral fat
34-year-old stage
+8
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Adipocyte of omentum tissue
Tissue
Visceral fat
Developmental stage
34-year-old stage
24-year-old stage
28-year-old stage
33-year-old stage
48-year-old stage
Adult stage
53-year-old stage
29-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.5281/zenodo.14001210
GEO series:GSE281356
HumanCellAtlas:df8eb7ce-3707-46af-b823-e081a562e954
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