Danio rerio

Glutamatergic neuron Glial cell Gabaergic neuron Photoreceptor cell Neuroblast (sensu vertebrata) Glycinergic neuron Neural progenitor cell

Zona limitans intrathalamica Diencephalon Forebrain Habenula Telencephalon Brain Multicellular anatomical structure

Pharyngula:high-pec Segmentation:26+ somites Pharyngula:prim-5 Hatching:pec-fin Hatching:long-pec Segmentation:20-25 somites Segmentation:14-19 somites Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Bergmann glial cell Vascular associated smooth muscle cell Fibroblast Ependymal cell Pericyte Endothelial cell Neuron Central nervous system macrophage Choroid plexus epithelial cell

Pontine reticular formation

50-year-old stage 42-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

L2/3-6 intratelencephalic projecting glutamatergic neuron Caudal ganglionic eminence derived interneuron Glutamatergic neuron Vascular leptomeningeal cell Astrocyte Oligodendrocyte precursor cell Oligodendrocyte L6 corticothalamic-projecting glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron Sst gabaergic interneuron Microglial cell Lamp5 gabaergic interneuron L6b glutamatergic cortical neuron Pericyte Endothelial cell L5 extratelencephalic projecting glutamatergic cortical neuron Vip gabaergic interneuron Pvalb gabaergic interneuron

Middle temporal gyrus Primary somatosensory cortex Primary auditory cortex Primary motor cortex Primary visual cortex Anterior cingulate gyrus

50-year-old stage 54-year-old stage 43-year-old stage

Normal

Female Male

Smart-seq v4

Nucleus

Homo sapiens

Cardiac neuron Cardiac endothelial cell Cardiac muscle cell Lymphocyte Pericyte Fibroblast of cardiac tissue Smooth muscle cell Myeloid cell

Interventricular septum Apex of heart Heart left ventricle Heart right ventricle

54-year-old stage 47-year-old stage 55-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Macrophage Epithelial cell Neutrophil Obsolete animal cell Fibroblast B cell Dendritic cell T cell Eosinophil

Normal

Seq-well

Homo sapiens

Macrophage Epithelial cell Neutrophil Obsolete animal cell Fibroblast B cell Dendritic cell T cell Eosinophil

Normal

Seq-well

Homo sapiens

Activated cd4-positive, alpha-beta t cell, human Naive b cell Classical monocyte Platelet Non-classical monocyte Lymphocyte Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Transitional stage b cell Cd16-negative, cd56-bright natural killer cell, human Neutrophil Plasmablast Conventional dendritic cell Naive thymus-derived cd8-positive, alpha-beta t cell Central memory cd4-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell Hematopoietic stem cell Cd4-positive, alpha-beta cytotoxic t cell Plasmacytoid dendritic cell, human Erythrocyte Regulatory t cell Memory b cell Activated cd8-positive, alpha-beta t cell, human Natural killer cell Immature neutrophil

Blood

70-year-old stage 60-year-old stage 80 year-old and over stage 48-year-old stage 75-year-old stage 59-year-old stage 47-year-old stage 68-year-old stage 53-year-old stage 84-year-old stage 38-year-old stage

Normal Covid-19

Female Male

10x 3' v3

Cell

Homo sapiens

Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Leukocyte Vascular associated smooth muscle cell Fibroblast Ependymal cell Pericyte Endothelial cell Neuron Central nervous system macrophage Choroid plexus epithelial cell

Midbrain nucleus

50-year-old stage 42-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Macrophage Mesothelial cell Lymphocyte of b lineage Malignant cell Dendritic cell T cell Natural killer cell Myeloid cell

Pleural effusion

Adult stage

Luminal a breast carcinoma Triple-negative breast carcinoma Luminal b breast carcinoma

10x 3' v3

Cell

Homo sapiens

Pro-b cell Pre-natural killer cell Naive b cell Erythroid progenitor cell Classical monocyte Cd4-positive, alpha-beta memory t cell Megakaryocyte progenitor cell Class switched memory b cell Non-classical monocyte Late promyelocyte Naive thymus-derived cd4-positive, alpha-beta t cell Unswitched memory b cell Small pre-b-ii cell Megakaryocyte-erythroid progenitor cell Cd16-negative, cd56-bright natural killer cell, human Erythroid lineage cell Fraction a pre-pro b cell Immature b cell Lymphoid lineage restricted progenitor cell Progenitor cell Cd8-positive, alpha-beta memory t cell Conventional dendritic cell Naive thymus-derived cd8-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell Central memory cd8-positive, alpha-beta t cell Mesenchymal cell Cd4-positive, alpha-beta cytotoxic t cell Plasma cell Memory b cell Plasmacytoid dendritic cell Common dendritic progenitor Myelocyte Precursor b cell Early promyelocyte Natural killer cell Hematopoietic multipotent progenitor cell Basophil mast progenitor cell Gamma-delta t cell Cd16-positive, cd56-dim natural killer cell, human

Bone marrow

25-year-old stage 65-year-old stage 59-year-old stage 34-year-old stage 26-year-old stage 69-year-old stage

Normal

Female Male

Bd rhapsody targeted mrna

Cell

Homo sapiens

Classical monocyte Glial cell Cd4-positive, alpha-beta t cell Leukocyte Macrophage Stromal cell Glandular secretory epithelial cell Mast cell Epithelial cell Neutrophil Monocyte Myeloid dendritic cell Blood vessel smooth muscle cell Stromal cell of ovary Hematopoietic precursor cell Endothelial cell Ovarian surface epithelial cell B cell Cd8-positive, alpha-beta t cell Oocyte Plasma cell Mature nk t cell T cell Plasmacytoid dendritic cell Theca cell Smooth muscle cell

Right ovary Ovary Left ovary

56-year-old stage 26-year-old stage 55-year-old stage

Normal

Female

Smart-seq2 10x 3' v3 Smart-seq3

Cell

Macaca mulatta

Medium spiny neuron

Cerebellar vermis Entorhinal cortex Brodmann (1909) area 19 Inferior temporal gyrus Hippocampal formation Cerebrocerebellum Lateral geniculate body Primary somatosensory cortex Perirhinal cortex Corpus callosum Anterior cingulate cortex Primary auditory cortex Dorsolateral prefrontal cortex Pons Primary motor cortex Superior temporal sulcus Midbrain Amygdala Primary visual cortex Superior parietal cortex Medulla oblongata Inferior parietal cortex Ventral lateral nucleus of thalamus Medial dorsal nucleus of thalamus Nucleus accumbens Head of caudate nucleus Prefrontal cortex

Prime adult stage Juvenile stage

Normal

Female Male

Sci-rna-seq3

Nucleus