Homo sapiens

Umbrella cell of urothelium Basal cell of urothelium Intermediate cell of urothelium

Ureteral orifice Ureterovesical junction Dome of urinary bladder Neck of urinary bladder

21-year-old stage

Normal

Male

10x 3' v3

Nucleus Cell

Mus musculus

Cardiac valve cell Spinal cord interneuron Premigratory neural crest cell Paraxial cell Notochordal cell Neuroplacodal cell Hemangioblast Mesodermal cell Gut endothelial cell Primitive red blood cell Splanchnic mesodermal cell Surface ectodermal cell Midbrain dopaminergic neuron Endodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Mus musculus

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

6-month-old stage

Autosomal dominant polycystic kidney disease

Male

Slide-seqv2

Homo sapiens

Natural killer cell Hematopoietic precursor cell Mast cell Cd8-positive, alpha-beta memory t cell Macrophage Innate lymphoid cell Regulatory t cell Cd4-positive, alpha-beta memory t cell B cell Circulating fibrocyte

Endometrium Myometrium

37-year-old stage 26-year-old stage 29-year-old stage 28-year-old stage 23-year-old stage 32-year-old stage 31-year-old stage Young adult stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Mus musculus

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney granular cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Macula densa epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

13-week-old stage

Diabetic kidney disease

Male

Slide-seqv2

Mus musculus

Granulocyte Natural killer cell Mature alpha-beta t cell Late pro-b cell Precursor b cell Lymphoid lineage restricted progenitor cell Macrophage Promonocyte Hematopoietic stem cell Cd4-positive, alpha-beta t cell Granulocytopoietic cell Granulocyte monocyte progenitor cell Immature b cell Megakaryocyte-erythroid progenitor cell Naive b cell Basophil Early pro-b cell

Bone marrow

3-month-old stage 20-month-old stage and over 18-month-old stage

Normal

Female Male

Smart-seq2

Cell

Homo sapiens

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Cortex of kidney

62-year-old stage

Normal

Male

Slide-seqv2

Homo sapiens

Memory b cell

Rheumatoid arthritis

10x 5' v1

Homo sapiens

Cerebellar neuron Progenitor cell Cerebellar granule cell precursor Purkinje cell

Cerebellum

Fetal stage

Normal

Female Male

Parse evercode whole transcriptome v2 10x 3' v3

Cell

Homo sapiens

Cerebellar inhibitory gabaergic interneuron

Pontine reticular formation Medial dorsal nucleus of thalamus Parabrachial nucleus Nucleus of medulla oblongata Red nucleus Pontine tegmentum Pontine nuclear group Globus pallidus Midbrain nucleus Septal nuclear complex Cerebellar nuclear complex Extrastriate cortex Epithalamus Dorsal tegmental nucleus Midbrain tectum Inferior olivary complex Substantia nigra Cerebrocerebellum Gray matter of midbrain Substantia innominata Hypothalamus Primary motor cortex Medial zone of hypothalamus Posterior parahippocampal gyrus Cerebellar vermis Spinal cord Mammillary body Bed nucleus of stria terminalis Lateral geniculate body Pretectal region

42-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Drosophila melanogaster

Neuron Fat cell Cardial cell Tracheolar cell Hemocyte Adult enterocyte Epithelial cell Adult alary muscle cell Muscle cell Adult tracheocyte Adult neuron Oenocyte Adult oenocyte

Oenocyte

Day 5 of adulthood

Normal

Female Male

10x 3' v3

Homo sapiens

T cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Committed oligodendrocyte precursor Hippocampal ca1-3 neuron Lamp5 lhx6 neuron Eccentric medium spiny neuron Pvalb chandelier gabaergic interneuron Medial ganglionic eminence derived interneuron Microglial cell Pericyte Cerebral cortex neuron Near-projecting glutamatergic cortical neuron Neuron Monocyte Intratelencephalic-projecting glutamatergic cortical neuron Caudal ganglionic eminence derived interneuron Vascular associated smooth muscle cell Sst chodl gabaergic interneuron Astrocyte Fibroblast

Brodmann (1909) area 14

50-year-old stage

Normal

Male

10x 3' v3

Nucleus