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Technology
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Cell
893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Fewest cells
2339
datasets
CELLxGENE
11,376 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+12
Natural killer cell
Cortex of kidney
+1
Cortex of kidney
61-year-old stage
61-year-old stage
Normal
Normal
Female
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
T cell
B cell
Non-classical monocyte
Neutrophil
Monocyte
Cd4-positive, alpha-beta t cell
Macrophage
Intermediate monocyte
Cd8-positive, alpha-beta t cell
Endothelial cell
Plasma cell
Kidney epithelial cell
Tissue
Cortex of kidney
Kidney
Developmental stage
61-year-old stage
Disease
Normal
Sex
Female
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
Single Cell Portal
11,358 cells
•
Ziegler et al., 2020
SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Explore
Mus musculus
Mus musculus
Basal cell of olfactory epithelium
+22
Basal cell of olfactory epithelium
Disease
Disease
Seq-well
Seq-well
Organism
Mus musculus
Cell type
Basal cell of olfactory epithelium
Oligodendrocyte
Dendritic cell
Erythroid lineage cell
Tuft cell
T cell
B cell
Neuron
Pericyte
Neutrophil
Type-6 epithelial cell of thymus
Monocyte
Macrophage
Endothelial cell
Nasal mucosa goblet cell
Olfactory receptor cell
Interneuron
Ionocyte
Ciliated epithelial cell
Olfactory bulb tufted cell
Epithelial cell
Fibroblast
Olfactory epithelial cell
Tissue
Developmental stage
Disease
Disease
Sex
Technology
Seq-well
Suspension type
CELLxGENE
11,312 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Cd14-low, cd16-positive monocyte
+30
Cd14-low, cd16-positive monocyte
Sinoatrial node
Sinoatrial node
Fifth decade stage
Fifth decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cd14-low, cd16-positive monocyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Innate lymphoid cell
Regular atrial cardiac myocyte
Effector memory cd8-positive, alpha-beta t cell
B cell
Endothelial cell of artery
Glial cell
Pericyte
Endothelial cell of lymphatic vessel
Neutrophil
Monocyte
Cd8-positive, alpha-beta cytotoxic t cell
Smooth muscle cell
Macrophage
Cd8-positive, alpha-beta t cell
Fibroblast of cardiac tissue
Adipocyte
Smooth muscle cell of the pulmonary artery
Cd16-negative, cd56-bright natural killer cell, human
Endothelial cell
Cd14-positive monocyte
Dendritic cell, human
Capillary endothelial cell
Endocardial cell
Activated cd4-positive, alpha-beta t cell
Vein endothelial cell
Mast cell
Mucosal invariant t cell
Cardiac pacemaker cell of sinoatrial node
Cd16-positive, cd56-dim natural killer cell, human
Tissue
Sinoatrial node
Developmental stage
Fifth decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12919
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
ArrayExpress BioStudies:E-MTAB-12975
CELLxGENE
11,272 cells
•
Lazarescu et al., 2025
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Subcutaneous adipocyte
Subcutaneous adipocyte
Subcutaneous adipose tissue
Subcutaneous adipose tissue
34-year-old stage
+3
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Subcutaneous adipocyte
Tissue
Subcutaneous adipose tissue
Developmental stage
34-year-old stage
24-year-old stage
33-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.5281/zenodo.14001210
GEO series:GSE281356
HumanCellAtlas:df8eb7ce-3707-46af-b823-e081a562e954
CELLxGENE
11,265 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+24
Oligodendrocyte
Hippocampal field
Hippocampal field
50-year-old stage
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Astrocyte
Hippocampal ca4 neuron
Medial ganglionic eminence derived interneuron
Pvalb chandelier gabaergic interneuron
Microglial cell
Oligodendrocyte precursor cell
Neuron
Ependymal cell
Pericyte
Committed oligodendrocyte precursor
Eccentric medium spiny neuron
Cerebral cortex neuron
Intratelencephalic-projecting glutamatergic cortical neuron
Vascular associated smooth muscle cell
Sst chodl gabaergic interneuron
Hippocampal ca1-3 neuron
Endothelial cell
Amygdala excitatory neuron
Caudal ganglionic eminence derived interneuron
Dentate gyrus granule cell
Central nervous system macrophage
Fibroblast
Lamp5 lhx6 neuron
Near-projecting glutamatergic cortical neuron
Tissue
Hippocampal field
Developmental stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
11,265 cells
•
Lazarescu et al., 2025
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Subcutaneous adipocyte
Subcutaneous adipocyte
Subcutaneous adipose tissue
Subcutaneous adipose tissue
34-year-old stage
+3
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Subcutaneous adipocyte
Tissue
Subcutaneous adipose tissue
Developmental stage
34-year-old stage
24-year-old stage
33-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.5281/zenodo.14001210
GEO series:GSE281356
HumanCellAtlas:df8eb7ce-3707-46af-b823-e081a562e954
CELLxGENE
11,244 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
Oligodendrocyte precursor cell
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
CELLxGENE
11,243 cells
•
Calandrelli et al., 2020
Stress-induced RNA–chromatin interactions promote endothelial dysfunction
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of artery
Endothelial cell of artery
Mesenteric artery
Mesenteric artery
42-year-old stage
+3
42-year-old stage
Type 2 diabetes mellitus
+1
Type 2 diabetes mellitus
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of artery
Tissue
Mesenteric artery
Developmental stage
42-year-old stage
59-year-old stage
46-year-old stage
28-year-old stage
Disease
Type 2 diabetes mellitus
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE135357
Github:Zhong-Lab-UCSD/NCOMMS-19-24818
HumanCellAtlas:87d52a86-bdc7-440c-b84d-170f7dc346d9
CELLxGENE
11,202 cells
•
Tran et al., 2021
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+9
Oligodendrocyte
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
54-year-old stage
+2
54-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Astrocyte
T cell
Microglial cell
Oligodendrocyte precursor cell
Macrophage
Mural cell
Pvalb gabaergic interneuron
Gabaergic interneuron
Glutamatergic neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
54-year-old stage
61-year-old stage
51-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
research.libd.org
Github:LieberInstitute/10xPilot_snRNAseq-human
CELLxGENE
11,177 cells
•
Moerkens et al., 2024
An iPSC-derived small intestine-on-chip with self-organizing epithelial, mesenchymal, and neural cells
Explore
h5ad
Homo sapiens
Homo sapiens
Goblet cell
+7
Goblet cell
Intestinal mucosa
Intestinal mucosa
26-year-old stage
+1
26-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Goblet cell
Neuron
Enterocyte
Transit amplifying cell
Paneth cell
Myofibroblast cell
Enteroendocrine cell
Mesenchymal stem cell
Tissue
Intestinal mucosa
Developmental stage
26-year-old stage
29-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:umcg-immunogenetics/Intestine_on_Chip_Moerkens_2024
Single Cell Portal
11,161 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+4
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Obsolete excitatory neuron
Brain microvascular endothelial cell
Obsolete inhibitory neuron
Astrocyte of the cerebellum
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD717) (section 40)
Corresponding registered brain section (MD717) (section 41)
Corresponding registered brain section (MD717) (section 42)
Corresponding registered brain section (MD717) (section 43)
Corresponding registered brain section (MD717) (section 44)
Corresponding registered brain section (MD717) (section 45)
CELLxGENE
11,152 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Plasmacytoid dendritic cell
+23
Plasmacytoid dendritic cell
Spleen
Spleen
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Plasmacytoid dendritic cell
Natural killer cell
Dendritic cell
Erythroid lineage cell
T cell
Erythroid progenitor cell
B cell
Conventional dendritic cell
Neutrophil
Lymphocyte
Monocyte
Granulocyte monocyte progenitor cell
Platelet
Mature nk t cell
Cd4-positive, alpha-beta t cell
Macrophage
Cd8-positive, alpha-beta t cell
Endothelial cell
Hematopoietic precursor cell
Basophil
Plasma cell
Myeloid cell
Eosinophil
Mesothelial cell
Tissue
Spleen
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Smart-seq2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
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