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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
14,057 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Trigeminal neuron
Trigeminal neuron
Trigeminal ganglion
Trigeminal ganglion
8-week-old stage
8-week-old stage
Peripheral neuropathy
+1
Peripheral neuropathy
Female
+1
Female
Bd rhapsody whole transcriptome analysis
+4
Bd rhapsody whole transcriptome analysis
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Trigeminal neuron
Tissue
Trigeminal ganglion
Developmental stage
8-week-old stage
Disease
Peripheral neuropathy
Normal
Sex
Female
Male
Technology
Bd rhapsody whole transcriptome analysis
Indrop
Smart-seq3
10x 3' v3
Drop-seq
Suspension type
Nucleus
Cell
Related Links
Jia et al.
Liu et al.
Nguyen et al.
Yang et al.
Renthal et al.
Wang et al.
Avraham et al.
Zhang et al.
Parpaite et al.
Sharma et al.
CELLxGENE
14,010 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Podocyte
+12
Podocyte
Cortex of kidney
Cortex of kidney
65-year-old stage
65-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Cortex of kidney
Developmental stage
65-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
13,964 cells
•
Lazarescu et al., 2025
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of omentum tissue
Adipocyte of omentum tissue
Visceral fat
Visceral fat
34-year-old stage
+8
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Adipocyte of omentum tissue
Tissue
Visceral fat
Developmental stage
34-year-old stage
53-year-old stage
48-year-old stage
29-year-old stage
28-year-old stage
24-year-old stage
Adult stage
33-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Zenodo code
GSE281356
HCA
CELLxGENE
13,909 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
13,905 cells
•
Choksi et al., 2024
An alternative cell cycle coordinates multiciliated cell differentiation
Explore
h5ad
Mus musculus
Mus musculus
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Tracheal epithelial cell
Mature stage
Mature stage
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Tracheal epithelial cell
Tissue
Tracheal epithelial cell
Developmental stage
Mature stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE228110
github.com
zenodo.org
zenodo.org
zenodo.org
CELLxGENE
13,900 cells
•
van Zyl et al., 2022
Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types
Explore
h5ad
Homo sapiens
Homo sapiens
Secondary lens fiber
+3
Secondary lens fiber
Lens of camera-type eye
Lens of camera-type eye
Adult stage
+1
Adult stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Secondary lens fiber
Lens epithelial cell
Lens fiber cell
Anterior lens cell
Tissue
Lens of camera-type eye
Developmental stage
Adult stage
33-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GSE199013
singlecell.broadinstitute.org
explore.data.humancellatlas.org
CELLxGENE
13,900 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+22
T cell
Ovary
Ovary
12-month-old stage
12-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Plasma cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
12-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
Single Cell Portal
13,861 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+5
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Oligodendrocyte
Microglial cell
Brain microvascular endothelial cell
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 229)
Corresponding registered brain section (MD720) (section 230)
Corresponding registered brain section (MD720) (section 231)
CELLxGENE
13,843 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Intestinal crypt stem cell of colon
+8
Intestinal crypt stem cell of colon
Caecum
+3
Caecum
37-year-old stage
+8
37-year-old stage
Colorectal cancer
+1
Colorectal cancer
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Intestinal crypt stem cell of colon
Secretory cell
Tuft cell of colon
Best4+ colonocyte
Malignant cell
Colon goblet cell
Early colonocyte
Colonocyte
Enteroendocrine cell of colon
Tissue
Caecum
Liver
Hepatic flexure of colon
Sigmoid colon
Developmental stage
37-year-old stage
65-year-old stage
68-year-old stage
39-year-old stage
50-year-old stage
74-year-old stage
49-year-old stage
64-year-old stage
45-year-old stage
Disease
Colorectal cancer
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github
CELLxGENE
13,822 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+9
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney loop of henle thick ascending limb epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
Single Cell Portal
13,805 cells
Explore
Oryctolagus cuniculus
Oryctolagus cuniculus
Intestinal crypt stem cell of large intestine
+5
Intestinal crypt stem cell of large intestine
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Oryctolagus cuniculus
Cell type
Intestinal crypt stem cell of large intestine
Best4+ enterocyte
Enteroendocrine cell
Transit amplifying cell
Large intestine goblet cell
Enterocyte of epithelium of large intestine
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
ASAP
v5
13,788 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Neuron
+9
Neuron
Male reproductive gland
Male reproductive gland
Day 2 of adulthood
Day 2 of adulthood
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Neuron
Fat cell
Tracheolar cell
Hemocyte
Spermatid
Epithelial cell
Germline cell
Muscle cell
Male accessory gland secondary cell
Male accessory gland main cell
Tissue
Male reproductive gland
Developmental stage
Day 2 of adulthood
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Related Links
ebi.ac.uk
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