Homo sapiens

Podocyte Renal principal cell Parietal epithelial cell Renal beta-intercalated cell Leukocyte Kidney capillary endothelial cell Epithelial cell of proximal tubule Renal alpha-intercalated cell Kidney distal convoluted tubule epithelial cell Kidney connecting tubule epithelial cell Kidney loop of henle thick ascending limb epithelial cell Mesangial cell Fibroblast

Cortex of kidney

61-year-old stage 52-year-old stage 54-year-old stage 50-year-old stage 62-year-old stage

Normal

Female Male

10x 5' v1

Nucleus

Mus musculus

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Macula densa epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

6-month-old stage

Autosomal dominant polycystic kidney disease

Male

Slide-seqv2

Homo sapiens

Cd4-positive helper t cell

Normal

10x scatac-seq

Mus musculus

Transit amplifying cell of small intestine Stem cell Enterocyte of epithelium of small intestine Small intestine goblet cell Paneth cell of epithelium of small intestine Enteroendocrine cell of small intestine Tuft cell of small intestine

Small intestine

3-month-old stage

Normal

Female Male

10x 3' v3

Cell

Mus musculus

Cardiac valve cell Spinal cord interneuron Premigratory neural crest cell Paraxial cell Notochordal cell Neuroplacodal cell Hemangioblast Mesodermal cell Gut endothelial cell Primitive red blood cell Splanchnic mesodermal cell Surface ectodermal cell Midbrain dopaminergic neuron Endodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Homo sapiens

T cell Natural killer cell Retinal ganglion cell Retinal pigment epithelial cell Off-bipolar cell Rod bipolar cell Endothelial cell of vascular tree Microglial cell Retinal cone cell Retinal rod cell Retina horizontal cell Amacrine cell B cell Pericyte Mueller cell Monocyte Astrocyte Fibroblast

Fovea centralis

Adult stage

Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Cardiac endothelial cell Lymphoid lineage restricted progenitor cell Immature innate lymphoid cell Neuronal receptor cell Pericyte Cardiac muscle myoblast Smooth muscle myoblast Fibroblast of cardiac tissue

Heart left ventricle

61-year-old stage 29-year-old stage 46-year-old stage

Myocardial infarction

Male

10x 3' v3

Nucleus

Homo sapiens

Pvalb gabaergic interneuron

Neocortex

Adult stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Retinal ganglion cell Off-bipolar cell On-bipolar cell Microglial cell Retinal cone cell Retinal rod cell Amacrine cell Mueller cell

Retina

42-year-old stage 53-year-old stage 80-year-old stage

Cataract Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Epithelial cell

Adenocarcinoma

Starmap

Homo sapiens

Endothelial cell of lymphatic vessel Endothelial cell Fibroblast of breast Pericyte

Breast

42-year-old stage 43-year-old stage 85-year-old stage 61-year-old stage 88-year-old stage 52-year-old stage 54-year-old stage 55-year-old stage 82-year-old stage 50-year-old stage 57-year-old stage 49-year-old stage 35-year-old stage 58-year-old stage 67-year-old stage 41-year-old stage 60-year-old stage 63-year-old stage 47-year-old stage 73-year-old stage

Invasive ductal breast carcinoma Invasive lobular breast carcinoma Breast carcinoma

Female

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Mus musculus

Neuron

Spinocerebellar tract Dorsal horn of spinal cord Spinal cord Lumbar spinal cord

24-day-old stage Theiler stage 27 4-week-old stage 23-day-old stage 21-day-old stage Infant stage 27-day-old stage 25-day-old stage 2-week-old stage 1-week-old stage 22-day-old stage Immature stage 26-day-old stage 2-month-old stage

Normal

Female Male

Split-seq 10x 3' v1 Scrb-seq Fluidigm c1-based library preparation Drop-seq 10x 3' v2

Nucleus Cell