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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
29,041 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
Oligodendrocyte precursor cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
29,011 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
28,984 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Midbrain-derived inhibitory neuron
+24
Midbrain-derived inhibitory neuron
Lateral amygdaloid nucleus
Lateral amygdaloid nucleus
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Midbrain-derived inhibitory neuron
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Amygdala excitatory neuron
Committed oligodendrocyte precursor
Hippocampal ca1-3 neuron
Lamp5 lhx6 neuron
Eccentric medium spiny neuron
Pvalb chandelier gabaergic interneuron
Medial ganglionic eminence derived interneuron
Ependymal cell
Microglial cell
Pericyte
Cerebral cortex neuron
Near-projecting glutamatergic cortical neuron
Neuron
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Sst chodl gabaergic interneuron
Astrocyte
Fibroblast
Medium spiny neuron
Tissue
Lateral amygdaloid nucleus
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
CELLxGENE
28,943 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
Sst gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
CELLxGENE
28,867 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+8
T cell
Limb muscle
Limb muscle
4-week-old stage
+3
4-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Endothelial cell
Schwann cell
Smooth muscle cell
Skeletal muscle satellite cell
Macrophage
Cell of skeletal muscle
B cell
Mesenchymal stem cell
Tissue
Limb muscle
Developmental stage
4-week-old stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
CELLxGENE
28,847 cells
•
Joseph et al., 2020
Urethral luminal epithelia are castration‐insensitive cells of the proximal prostate
Explore
h5ad
Homo sapiens
Homo sapiens
Luminal cell of prostate epithelium
+8
Luminal cell of prostate epithelium
Transition zone of prostate
+1
Transition zone of prostate
29-year-old stage
+4
29-year-old stage
Benign prostatic hyperplasia
+1
Benign prostatic hyperplasia
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Luminal cell of prostate epithelium
Prostate gland microvascular endothelial cell
Secretory cell
Neuroendocrine cell
Leukocyte
Smooth muscle cell of prostate
Prostate stromal cell
Epithelial cell of urethra
Basal cell of prostate epithelium
Tissue
Transition zone of prostate
Peripheral zone of prostate
Developmental stage
29-year-old stage
57-year-old stage
72-year-old stage
74-year-old stage
31-year-old stage
Disease
Benign prostatic hyperplasia
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
strandlab.net
Human Raw Data
Mouse Raw Data
www.gudmap.org
Bgee
28,810 cells
•
Herrera-Uribe et al., 2021
Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing
Explore
Bulk RNA-Seq processed expression values in Sus scrofa (tsv.gz)
Sus scrofa
Sus scrofa
Natural killer cell
+11
Natural killer cell
B cell
+5
B cell
Normal
Normal
Male
+1
Male
10x genomics v2
+1
10x genomics v2
Organism
Sus scrofa
Cell type
Natural killer cell
Erythrocyte
Gamma-delta t cell
Cd8-positive, alpha-beta t cell
Peripheral blood mononuclear cell
Plasmacytoid dendritic cell
Lymphocyte
Cd4-positive, alpha-beta t cell
B cell
Monocyte
Antibody secreting cell
Conventional dendritic cell
Tissue
B cell
T cell
Myeloid cell
Blood
Natural killer cell
Gamma-delta t cell
Developmental stage
Disease
Normal
Sex
Male
Female
Technology
10x genomics v2
Illumina
Suspension type
Related Links
ncbi.nlm.nih.gov
CELLxGENE
28,758 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Mononuclear phagocyte
Mononuclear phagocyte
Lamina propria of small intestine
+1
Lamina propria of small intestine
66-year-old stage
+4
66-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mononuclear phagocyte
Tissue
Lamina propria of small intestine
Lamina propria of large intestine
Developmental stage
66-year-old stage
74-year-old stage
63-year-old stage
76-year-old stage
83-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
doi.org
github.com
GSE309239
CELLxGENE
28,724 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+30
T cell
Hippocampal field
Hippocampal field
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Amygdala excitatory neuron
Committed oligodendrocyte precursor
Dentate gyrus granule cell
Cerebellar granule cell
Hippocampal ca1-3 neuron
Lamp5 lhx6 neuron
Eccentric medium spiny neuron
Pvalb chandelier gabaergic interneuron
Medial ganglionic eminence derived interneuron
Ependymal cell
Microglial cell
Choroid plexus epithelial cell
Pericyte
Cerebral cortex neuron
Near-projecting glutamatergic cortical neuron
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vascular associated smooth muscle cell
Sst chodl gabaergic interneuron
Astrocyte
Fibroblast
Medium spiny neuron
Hippocampal ca4 neuron
Tissue
Hippocampal field
Developmental stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
Single Cell Portal
28,718 cells
Explore
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Pancreatic ductal adenocarcinoma
Pancreatic ductal adenocarcinoma
Seq-well s3
Seq-well s3
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Developmental stage
Disease
Pancreatic ductal adenocarcinoma
Sex
Technology
Seq-well s3
Suspension type
CELLxGENE
28,718 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Vip gabaergic interneuron
Vip gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Vip gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
CELLxGENE
28,702 cells
•
Henry et al., 2018
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra
Explore
h5ad
Homo sapiens
Homo sapiens
Luminal cell of prostate epithelium
+8
Luminal cell of prostate epithelium
Transition zone of prostate
+1
Transition zone of prostate
29-year-old stage
+1
29-year-old stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Luminal cell of prostate epithelium
Prostate gland microvascular endothelial cell
Secretory cell
Neuroendocrine cell
Leukocyte
Fibroblast of connective tissue of prostate
Smooth muscle cell of prostate
Epithelial cell of urethra
Basal cell of prostate epithelium
Tissue
Transition zone of prostate
Peripheral zone of prostate
Developmental stage
29-year-old stage
31-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
www.gudmap.org
cells.ucsc.edu
ncbi.nlm.nih.gov
strandlab.net
git.biohpc.swmed.edu
explore.data.humancellatlas.org
ncbi.nlm.nih.gov
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