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Technology
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Cell
890
Nucleus
655
Data Source
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Asap
43
Bgee
40
Cellxgene
2,066
Single cell portal
179
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Most cells
Fewest cells
2328
datasets
CELLxGENE
26,172 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+9
Astrocyte
Lateral posterior nucleus of thalamus
Lateral posterior nucleus of thalamus
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Lateral posterior nucleus of thalamus
Developmental stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
26,134 cells
•
Lengyel et al., 2022
A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+5
Endothelial cell of lymphatic vessel
Ovary
Ovary
70-year-old stage
+4
70-year-old stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Leukocyte
Stromal cell
Pericyte
Endothelial cell
Smooth muscle cell
Tissue
Ovary
Developmental stage
70-year-old stage
62-year-old stage
65-year-old stage
58-year-old stage
72-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Drop-seq
Suspension type
Cell
Related Links
EGA Study:EGAS00001006780
CELLxGENE
26,129 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Middle temporal gyrus
Middle temporal gyrus
80-year-old stage
+23
80-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Tissue
Middle temporal gyrus
Developmental stage
80-year-old stage
85-year-old stage
82-year-old stage
70-year-old stage
77-year-old stage
50-year-old stage
86-year-old stage
60-year-old stage
80 year-old and over stage
89-year-old stage
65-year-old stage
75-year-old stage
Adult stage
78-year-old stage
68-year-old stage
72-year-old stage
88-year-old stage
84-year-old stage
69-year-old stage
43-year-old stage
29-year-old stage
87-year-old stage
81-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
Allen Brain Map:seattle-alzheimers-disease
CELLxGENE
26,095 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+11
Astrocyte
Dorsal tegmental nucleus
Dorsal tegmental nucleus
50-year-old stage
+2
50-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Bergmann glial cell
Vascular associated smooth muscle cell
Fibroblast
Ependymal cell
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Dorsal tegmental nucleus
Developmental stage
50-year-old stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
26,086 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Hepatic flexure of colon
+9
Hepatic flexure of colon
70-year-old stage
+22
70-year-old stage
Colorectal cancer
Colorectal cancer
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Hepatic flexure of colon
Rectum
Liver
Chest wall
Caecum
Lung
Transverse colon
Peritoneum
Sigmoid colon
Descending colon
Developmental stage
70-year-old stage
50-year-old stage
62-year-old stage
52-year-old stage
60-year-old stage
44-year-old stage
48-year-old stage
64-year-old stage
45-year-old stage
74-year-old stage
65-year-old stage
40-year-old stage
75-year-old stage
37-year-old stage
78-year-old stage
68-year-old stage
49-year-old stage
35-year-old stage
53-year-old stage
73-year-old stage
39-year-old stage
41-year-old stage
55-year-old stage
Disease
Colorectal cancer
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:dpeerlab/progressive-plasticity-crc-metastasis.git
CELLxGENE
26,027 cells
•
Liu et al., 2022
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response
Explore
h5ad
Homo sapiens
Homo sapiens
Cd4-positive helper t cell
+5
Cd4-positive helper t cell
Lymph node
Lymph node
Adult stage
Adult stage
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Cd4-positive helper t cell
B cell
Cd8-positive, alpha-beta t cell
Dendritic cell
Regulatory t cell
Myeloid cell
Tissue
Lymph node
Developmental stage
Adult stage
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
BroadInstitute Single-Cell Portal:SCP1348/slide-tcr-seq-data
Github:soph-liu/Slide-TCR-seq
CELLxGENE
26,027 cells
•
Maatz et al., 2025
The cellular and molecular cardiac tissue responses in human inflammatory cardiomyopathies after SARS-CoV-2 infection and COVID-19 vaccination
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac ventricle fibroblast
Cardiac ventricle fibroblast
Apex of heart
+1
Apex of heart
19-year-old stage
+22
19-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cardiac ventricle fibroblast
Tissue
Apex of heart
Heart left ventricle
Developmental stage
19-year-old stage
70-year-old stage
21-year-old stage
32-year-old stage
52-year-old stage
64-year-old stage
25-year-old stage
Eighth decade stage
27-year-old stage
28-year-old stage
Fifth decade stage
31-year-old stage
61-year-old stage
49-year-old stage
30-year-old stage
24-year-old stage
Seventh decade stage
26-year-old stage
Third decade stage
29-year-old stage
38-year-old stage
55-year-old stage
Sixth decade stage
Disease
Normal
Myocarditis
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
EGA Study:EGAS50000000769
ENA Project:PRJEB39602
EGA dataset:EGAD00001009292
DOI:10.1126/science.abo1984
DOI:10.1038/s41586-020-2797-4
CELLxGENE
25,957 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Kidney loop of henle thick ascending limb epithelial cell
+13
Kidney loop of henle thick ascending limb epithelial cell
Kidney
Kidney
13-week-old stage
13-week-old stage
Diabetic kidney disease
Diabetic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Kidney loop of henle thick ascending limb epithelial cell
Kidney granular cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney interstitial fibroblast
Kidney collecting duct principal cell
Macula densa epithelial cell
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Podocyte
Endothelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Diabetic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
25,908 cells
•
Yan et al., 2020
Cell Atlas of The Human Fovea and Peripheral Retina
Explore
h5ad
Homo sapiens
Homo sapiens
Off-bipolar cell
+1
Off-bipolar cell
Peripheral region of retina
+1
Peripheral region of retina
60-year-old stage
+6
60-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Off-bipolar cell
On-bipolar cell
Tissue
Peripheral region of retina
Fovea centralis
Developmental stage
60-year-old stage
64-year-old stage
74-year-old stage
65-year-old stage
78-year-old stage
53-year-old stage
69-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE148077
HumanCellAtlas:30dc3964-1135-4b56-b393-ce2dcbc6e379
BroadInstitute Single-Cell Portal:SCP839/cell-atlas-of-the-human-fovea-and-peripheral-retina
CELLxGENE
25,875 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+10
Astrocyte
Pretectal region
Pretectal region
42-year-old stage
+1
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Leukocyte
Vascular associated smooth muscle cell
Fibroblast
Ependymal cell
Pericyte
Endothelial cell
Neuron
Central nervous system macrophage
Tissue
Pretectal region
Developmental stage
42-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
25,871 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte
Adipocyte
Omental fat pad
+1
Omental fat pad
57-year-old stage
+10
57-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Adipocyte
Tissue
Omental fat pad
Subcutaneous adipose tissue
Developmental stage
57-year-old stage
36-year-old stage
58-year-old stage
68-year-old stage
51-year-old stage
35-year-old stage
53-year-old stage
73-year-old stage
24-year-old stage
29-year-old stage
41-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
gitlab.com
GEO series:GSE176067
dbGaP Study:phs002766
BroadInstitute Single-Cell Portal:SCP1376
GEO series:GSE176171
CELLxGENE
25,832 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+21
Cardiac endothelial cell
Cardiac ventricle
+4
Cardiac ventricle
60-year-old stage
+5
60-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Cd4-positive, alpha-beta t cell
Platelet
Macrophage
Mesothelial cell
Ventricular cardiac muscle cell
Mast cell
Neutrophil
Monocyte
Regular atrial cardiac myocyte
Pericyte
B cell
Cd8-positive, alpha-beta t cell
Plasma cell
Erythrocyte
Fibroblast of cardiac tissue
Mature nk t cell
T cell
Plasmacytoid dendritic cell
Smooth muscle cell
Neuron
Natural killer cell
Tissue
Cardiac ventricle
Right cardiac atrium
Cardiac atrium
Heart right ventricle
Heart
Developmental stage
60-year-old stage
45-year-old stage
74-year-old stage
59-year-old stage
56-year-old stage
61-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
CZ BioHub Portal:tabula-sapiens-portal
UCSC Cell Browser:tabula-sapiens
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
DOI:10.1101/2024.12.03.626516
AWS Open Data:tabula-sapiens
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
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