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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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2515
datasets
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+9
Natural killer cell
Nose skin
Nose skin
77-year-old stage
77-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Natural killer cell
Basal cell
Schwann cell
Endothelial cell of vascular tree
Basal cell of epidermis
Cell of skeletal muscle
Pericyte
Suprabasal keratinocyte
Fibroblast
Chondrocyte
Tissue
Nose skin
Developmental stage
77-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Spatial Skin Atlas
scRNAseq (E-MTAB-13085)
Visium (E-MTAB-13084)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+13
Natural killer cell
Skin of cheek
Skin of cheek
85-year-old stage
85-year-old stage
Basal cell carcinoma
Basal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Natural killer cell
Endothelial cell of lymphatic vessel
Basal cell
Smooth muscle cell
Endothelial cell of vascular tree
Basal cell of epidermis
Macrophage
Regulatory t cell
Plasma cell
Pericyte
Suprabasal keratinocyte
Conventional dendritic cell
Fibroblast
Dendritic cell
Tissue
Skin of cheek
Developmental stage
85-year-old stage
Disease
Basal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Spatial Skin Atlas
scRNAseq (E-MTAB-13085)
Visium (E-MTAB-13084)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+15
Neutrophil
Heart left ventricle
Heart left ventricle
Seventh decade stage
Seventh decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Neutrophil
Endothelial cell of lymphatic vessel
Endothelial cell of artery
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Adipocyte
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Glial cell
Plasma cell
Vein endothelial cell
Cd14-positive monocyte
Mesothelial cell
Monocyte
Regular ventricular cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Airway submucosal gland duct basal cell
+22
Airway submucosal gland duct basal cell
Trachea
Trachea
Eighth decade stage
Eighth decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Airway submucosal gland duct basal cell
Ciliated cell
Endothelial cell of lymphatic vessel
Lung secretory cell
Non-myelinating schwann cell
Lung interstitial macrophage
Iga plasma cell
Blood vessel smooth muscle cell
Basal cell
Endothelial cell of artery
Igg plasma cell
Bronchus fibroblast of lung
Lung macrophage
Goblet cell
Serous secreting cell of bronchus submucosal gland
Vein endothelial cell
Respiratory tract suprabasal cell
Lung perichondrial fibroblast
Adventitial cell
Fibroblast
Pulmonary alveolar type 2 cell
Lung pericyte
Chondrocyte
Tissue
Trachea
Developmental stage
Eighth decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
PRJEB52292
explore.data.humancellatlas.org
E-MTAB-11640
S-BIAD570
5locationslung.cellgeni.sanger.ac.uk
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Endocardial cell
+10
Endocardial cell
Apex of heart
Apex of heart
Seventh decade stage
Seventh decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endocardial cell
Endothelial cell of artery
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Macrophage
Cd16-positive, cd56-dim natural killer cell, human
Vein endothelial cell
Pericyte
Monocyte
Regular ventricular cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Apex of heart
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac pacemaker cell of sinoatrial node
+28
Cardiac pacemaker cell of sinoatrial node
Sinoatrial node
Sinoatrial node
Fifth decade stage
Fifth decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac pacemaker cell of sinoatrial node
Neutrophil
Endocardial cell
Dendritic cell, human
Endothelial cell of lymphatic vessel
Activated cd4-positive, alpha-beta t cell
Endothelial cell
Mast cell
Cd8-positive, alpha-beta t cell
Endothelial cell of artery
Capillary endothelial cell
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Adipocyte
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Cd16-positive, cd56-dim natural killer cell, human
Innate lymphoid cell
Glial cell
Vein endothelial cell
Cd14-positive monocyte
Cd14-low, cd16-positive monocyte
B cell
Pericyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Regular atrial cardiac myocyte
Monocyte
Fibroblast of cardiac tissue
Effector memory cd8-positive, alpha-beta t cell
Tissue
Sinoatrial node
Developmental stage
Fifth decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kuppe et al., 2022
Spatial multi-omic map of human myocardial infarction
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+8
Cardiac endothelial cell
Heart left ventricle
Heart left ventricle
55-year-old stage
55-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Mast cell
Lymphoid lineage restricted progenitor cell
Immature innate lymphoid cell
Neuronal receptor cell
Pericyte
Cardiac muscle myoblast
Smooth muscle myoblast
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
55-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
zenodo.org
github.com
zenodo.org
github.com
kramannlab.com
zenodo.org
ega-archive.org
zenodo.org
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Kuppe et al., 2022
Spatial multi-omic map of human myocardial infarction
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+7
Cardiac endothelial cell
Heart left ventricle
Heart left ventricle
43-year-old stage
43-year-old stage
Myocardial infarction
Myocardial infarction
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Lymphoid lineage restricted progenitor cell
Immature innate lymphoid cell
Neuronal receptor cell
Pericyte
Cardiac muscle myoblast
Smooth muscle myoblast
Fibroblast of cardiac tissue
Tissue
Heart left ventricle
Developmental stage
43-year-old stage
Disease
Myocardial infarction
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
zenodo.org
github.com
zenodo.org
github.com
kramannlab.com
zenodo.org
ega-archive.org
zenodo.org
data.humancellatlas.org
CELLxGENE
4,992 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Thymus
Thymus
5-month-old stage
5-month-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Smooth muscle cell
Epithelial cell
Macrophage
B cell
Fibroblast
Tissue
Thymus
Developmental stage
5-month-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+10
Endothelial cell
Labial gland
Labial gland
43-year-old stage
+1
43-year-old stage
Sjogren syndrome
Sjogren syndrome
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Ionocyte
Igg plasma cell
Cd8-positive, alpha-beta cytotoxic t cell
Duct epithelial cell
Acinar cell of salivary gland
Cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta regulatory t cell
Fibroblast
Dendritic cell
Tissue
Labial gland
Developmental stage
43-year-old stage
51-year-old stage
Disease
Sjogren syndrome
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
phs002446
CELLxGENE
4,992 cells
•
Zhang et al., 2023
A human embryonic limb cell atlas resolved in space and time
Explore
h5ad
Homo sapiens
Homo sapiens
Osteoblast
+21
Osteoblast
Hindlimb
Hindlimb
Carnegie stage 23
Carnegie stage 23
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Osteoblast
Muscle cell
Endothelial cell of lymphatic vessel
Fibroblast of dermis
Peridermal cell
Hypertrophic chondrocyte
Tendon cell
Basal cell
Endothelial cell of artery
Schwann cell
Smooth muscle cell
Articular chondrocyte
Connective tissue cell
Macrophage
Vein endothelial cell
Mesenchymal cell
Megakaryocyte
Pericyte
Reticulocyte
Conventional dendritic cell
Fibroblast
Chondrocyte
Tissue
Hindlimb
Developmental stage
Carnegie stage 23
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
developmental.cellatlas.io
mouse scRNA-seq
human Visium
human scRNA-seq
github.com
CELLxGENE
4,992 cells
•
Yayon et al., 2024
A spatial human thymus cell atlas mapped to a continuous tissue axis
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Thymus
Thymus
17th week post-fertilization stage
17th week post-fertilization stage
Normal
Normal
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Epithelial cell
Macrophage
B cell
Pericyte
Fibroblast
Tissue
Thymus
Developmental stage
17th week post-fertilization stage
Disease
Normal
Sex
Technology
Visium spatial gene expression v1
Suspension type
Related Links
github.com
BioImage Archive
PRJEB77091
EGAD00001015384
E-MTAB-8581
GSE271304
GSE206710
CITE-seq
TissueTag github
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