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Cell Type
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Disease
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
6,497 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Endocardial cell
+15
Endocardial cell
Apex of heart
Apex of heart
Fifth decade stage
+1
Fifth decade stage
Normal
Normal
Female
+1
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endocardial cell
Endothelial cell of lymphatic vessel
Endothelial cell
Endothelial cell of artery
Capillary endothelial cell
Smooth muscle cell
Smooth muscle cell of the pulmonary artery
Macrophage
Cd16-positive, cd56-dim natural killer cell, human
Glial cell
Vein endothelial cell
B cell
Pericyte
Monocyte
Regular ventricular cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Apex of heart
Developmental stage
Fifth decade stage
Seventh decade stage
Disease
Normal
Sex
Female
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
multiome snRNA-seq (E-MTAB-12916)
multiome snATAC-seq (E-MTAB-12919)
Visium (E-MTAB-12975)
explore.data.humancellatlas.org
Bgee
6,490 cells
•
Guo et al., 2018
The adult human testis transcriptional cell atlas
Explore
scRNA-Seq droplet-based processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Endothelial cell
+9
Endothelial cell
Testis
Testis
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
10x genomics v2
10x genomics v2
Organism
Homo sapiens
Cell type
Endothelial cell
Primary spermatocyte
Sertoli cell
Obsolete male germ line stem cell (sensu vertebrata)
Macrophage
Peritubular myoid cell
Spermatid
Sperm
Leydig cell
Spermatogonium
Tissue
Testis
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
10x genomics v2
Suspension type
Related Links
SRA Project:SRP135999
CELLxGENE
6,469 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
6,465 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Mechanoreceptor cell
+6
Mechanoreceptor cell
Forebrain meninges
+2
Forebrain meninges
13th week post-fertilization stage
+8
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mechanoreceptor cell
Schwann cell
Epithelial cell
Neural crest cell
Neuroblast (sensu vertebrata)
Radial glial cell
Schwann cell precursor
Tissue
Forebrain meninges
Brain meninx
Meninx
Developmental stage
13th week post-fertilization stage
12th week post-fertilization stage
Carnegie stage 20
9th week post-fertilization stage
Carnegie stage 23
10th week post-fertilization stage
Carnegie stage 21
Carnegie stage 16
Carnegie stage 18
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
github.com
CELLxGENE
6,448 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+21
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Mast cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
6,430 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+18
Granulosa cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
6,362 cells
•
Matuck et al., 2026
An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+7
Neutrophil
Minor salivary gland
+2
Minor salivary gland
34-year-old stage
+11
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Cd8-positive, alpha-beta t cell
Cd4-positive helper t cell
Macrophage
Innate lymphoid cell
Plasma cell
B cell
Dendritic cell
Tissue
Minor salivary gland
Submandibular gland
Parotid gland
Developmental stage
34-year-old stage
26-year-old stage
Sixth decade stage
53-year-old stage
48-year-old stage
39-year-old stage
56-year-old stage
28-year-old stage
24-year-old stage
62-year-old stage
Fourth decade stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
github.com
CELLxGENE
6,339 cells
•
Jones et al., 2024
Cellular atlas of the human ovary using morphologically guided spatial transcriptomics and single-cell sequencing
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+3
Endothelial cell
Ovary
Ovary
31-year-old stage
31-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell
Stromal cell of ovary
Leukocyte
Pericyte
Tissue
Ovary
Developmental stage
31-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE260685
CELLxGENE
6,289 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+2
Blood vessel endothelial cell
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
+1
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Endothelial cell of periportal hepatic sinusoid
Endothelial cell of pericentral hepatic sinusoid
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
github.com
GSE185477
explore.data.humancellatlas.org
protocols.io
macparlandlab.shinyapps.io
CELLxGENE
6,288 cells
•
Yao et al., 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+5
Glutamatergic neuron
Primary motor cortex
Primary motor cortex
Prime adult stage
Prime adult stage
Normal
Normal
Female
+1
Female
Smart-seq v4
Smart-seq v4
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Endothelial cell
Smooth muscle cell
Leptomeningeal cell
Astrocyte
Gabaergic neuron
Tissue
Primary motor cortex
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq v4
Suspension type
Cell
Related Links
Methyl-C sequencing of single cell nuclei: snmC-seq2
Fresh Frozen Mouse Brain Preparation (for Single Nuclei Sequencing)
assets.nemoarchive.org
CELLxGENE
6,265 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
T cell
+20
T cell
Ovary
Ovary
3-month-old stage
3-month-old stage
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
T cell
Granulosa cell
Blood vessel endothelial cell
Stromal cell
Endothelial cell of lymphatic vessel
Cumulus granulosa cell
Smooth muscle cell
Steroidogenic stromal cell of ovary
Endothelial cell of vascular tree
Ovarian surface epithelial cell
Adipocyte
Macrophage
Oviduct secretory cell
Oocyte
Late luteal cell
Atretic granulosa cell
Early luteal cell
Theca cell
Dendritic cell
Ovarian fibroblast
Mural granulosa cell
Tissue
Ovary
Developmental stage
3-month-old stage
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
CELLxGENE
6,235 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
T cell
+32
T cell
Small intestine
Small intestine
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
T cell
Neutrophil
Natural killer cell
Endothelial cell of lymphatic vessel
Non-myelinating schwann cell
Mature nk t cell
Interstitial cell of cajal
Cd8-positive, alpha-beta t cell
Epithelial cell of small intestine
Endothelial cell of artery
Capillary endothelial cell
Enterocyte of epithelium of small intestine
Smooth muscle cell
Intestinal tuft cell
Lymphocyte
Small intestine goblet cell
Macrophage
Innate lymphoid cell
Myeloid cell
Intestinal enteroendocrine cell
Plasma cell
Cd4-positive, alpha-beta t cell
Vein endothelial cell
Eosinophil
Mesothelial cell
B cell
Pericyte
Vascular associated smooth muscle cell
Basophil
Conventional dendritic cell
Fibroblast
Dendritic cell
M cell of gut
Tissue
Small intestine
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
cells.ucsc.edu
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