Mus musculus

Endothelial cell of hepatic sinusoid Neutrophil Hepatocyte Endothelial cell of periportal hepatic sinusoid Erythrocyte Cytotoxic t cell Kupffer cell Intermediate monocyte Plasmacytoid dendritic cell Hepatic stellate cell Macrophage Endothelial cell of pericentral hepatic sinusoid Innate lymphoid cell Cholangiocyte Mesothelial cell B cell Peritoneal macrophage Basophil Conventional dendritic cell Fibroblast

Liver

10-month-old stage

Normal Metabolic dysfunction-associated steatotic liver disease

Male

Visium spatial gene expression v1

Mus musculus

Multiciliated ependymal cell Deuterosomal cell Radial glial cell Neuron associated cell

Multiciliated ependymal cell

Theiler stage 27

Normal

10x 3' v3

Cell

Mus musculus

Granulosa cell Blood vessel endothelial cell Stromal cell Endothelial cell of lymphatic vessel Cumulus granulosa cell Smooth muscle cell Steroidogenic stromal cell of ovary Endothelial cell of vascular tree Ovarian surface epithelial cell Adipocyte Macrophage Oviduct secretory cell Oocyte Late luteal cell Atretic granulosa cell Early luteal cell Theca cell Dendritic cell Ovarian fibroblast Mural granulosa cell

Ovary

9-month-old stage

Normal

Female

Slide-seqv2

Mus musculus

T cell Granulosa cell Blood vessel endothelial cell Stromal cell Endothelial cell of lymphatic vessel Cumulus granulosa cell Mast cell Smooth muscle cell Steroidogenic stromal cell of ovary Endothelial cell of vascular tree Ovarian surface epithelial cell Adipocyte Macrophage Oviduct secretory cell Plasma cell Oocyte Late luteal cell Atretic granulosa cell Early luteal cell Theca cell Dendritic cell Ovarian fibroblast Mural granulosa cell

Ovary

3-month-old stage

Normal

Female

Slide-seqv2

Mus musculus

Cardiac valve cell Spinal cord interneuron Premigratory neural crest cell Paraxial cell Neuroplacodal cell Neurectodermal cell Hemangioblast Mesodermal cell Gut endothelial cell Primitive red blood cell Splanchnic mesodermal cell Surface ectodermal cell Midbrain dopaminergic neuron Endodermal cell

Embryo

Theiler stage 14

Normal

Slide-seqv2

Homo sapiens

T cell Natural killer cell Endothelial cell Schwann cell Macrophage Hematopoietic stem cell Glial cell Plasma cell Odontoblast B cell Fibroblast Dendritic cell Non-classical monocyte

Dental pulp

21-year-old stage 26-year-old stage 36-year-old stage 20-year-old stage

Pulpitis Enamel caries Normal

Female Male

10x 3' v2

Cell

Microcebus murinus

Fast muscle cell T cell Stromal cell Endothelial cell of lymphatic vessel Non-myelinating schwann cell Tendon cell Endothelial cell of artery Capillary endothelial cell Macrophage Vein endothelial cell Pericyte Skeletal muscle satellite stem cell Vascular associated smooth muscle cell Basophil Fibroblast Myelinating schwann cell Oral mucosa squamous cell Dendritic cell

Tongue muscle Tongue Epithelium of tongue

Post-juvenile adult stage

Normal

Female Male

Smart-seq2 10x 3' v2

Cell

Microcebus murinus

Microcebus murinus

Stromal cell Capillary endothelial cell Lymphocyte Macrophage Spermatid Eosinophil Mesothelial cell Spermatocyte Spermatogonium

Testis

Post-juvenile adult stage

Normal

Male

Smart-seq2 10x 3' v2

Cell

Microcebus murinus

Drosophila melanogaster

Neuron Fat cell Glial cell Hemocyte Epithelial cell Muscle cell Adult glial cell Sensory neuron

Haltere

Day 5 of adulthood

Normal

Female Male

10x 3' v3

Danio rerio

Cranial motor neuron Lateral motor column neuron Motor neuron

Multicellular anatomical structure Spinal cord Head

Pharyngula:prim-15 Hatching:long-pec Larval:protruding-mouth Pharyngula:prim-25 Segmentation:26+ somites Segmentation:14-19 somites Hatching:pec-fin Segmentation:20-25 somites Pharyngula:high-pec Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus