Mus musculus

Neuron

Embryo

Theiler stage 22 Theiler stage 20 Theiler stage 24 Theiler stage 27 Theiler stage 17 Theiler stage 19 Theiler stage 15 Theiler stage 26 Theiler stage 21 Theiler stage 23 Theiler stage 16 Theiler stage 25 Theiler stage 18

Normal

Male Female

Sci-rna-seq3

Nucleus

Homo sapiens

Macrophage Endothelial cell of artery Conventional dendritic cell Fibroblast T follicular helper cell Memory b cell Cycling macrophage Pericyte Myeloid dendritic cell Endothelial cell Natural killer cell Capillary endothelial cell Naive t cell Effector memory cd4-positive, alpha-beta t cell Igg plasma cell Effector memory cd8-positive, alpha-beta t cell Cycling stromal cell Myofibroblast cell Cd4-positive helper t cell Vascular associated smooth muscle cell Cycling t cell Malignant cell Cd8-positive, alpha-beta regulatory t cell Exhausted t cell Plasmacytoid dendritic cell Cd4-positive, cd25-positive, ccr4-positive, alpha-beta regulatory t cell Mast cell Vein endothelial cell Endothelial cell of vascular tree

Breast

69-year-old stage 83-year-old stage 80 year-old and over stage 47-year-old stage 60-79 year-old stage 25-year-old stage 64-year-old stage 79-year-old stage 50-year-old stage 36-year-old stage 38-year-old stage 66-year-old stage 49-year-old stage Eighth decade stage 82-year-old stage 67-year-old stage Ninth decade stage Late adult stage 63-year-old stage 54-year-old stage 80-year-old stage 65-year-old stage 58-year-old stage 32-year-old stage 42-year-old stage 30-year-old stage 71-year-old stage 60-year-old stage 41-year-old stage 34-year-old stage Fifth decade stage 45-year-old stage 85-year-old stage 61-year-old stage 62-year-old stage 43-year-old stage 59-year-old stage 29-year-old stage Adult stage 57-year-old stage Sixth decade stage 46-year-old stage 35-year-old stage Middle aged stage 73-year-old stage Prime adult stage 88-year-old stage 37-year-old stage 52-year-old stage 55-year-old stage 70-year-old stage Seventh decade stage 84-year-old stage

Her2 positive breast carcinoma Invasive tubular breast carcinoma Metaplastic breast carcinoma Breast cancer Triple-negative breast carcinoma Breast carcinoma Breast apocrine carcinoma Breast mucinous carcinoma Invasive lobular breast carcinoma Invasive ductal breast carcinoma Estrogen-receptor positive breast cancer

Male Female

10x 3' v3 10x 5' transcription profiling 10x 5' v2 10x 3' v2 10x 5' v1

Cell

Mus musculus

Oligodendrocyte precursor cell Macrophage Inhibitory interneuron Fibroblast Cerebellar golgi cell Endothelial cell Astrocyte of the cerebellum Interneuron Microglial cell Oligodendrocyte Endothelial stalk cell Glutamatergic neuron Bergmann glial cell Purkinje cell Ependymal cell Cerebellar granule cell

Cerebellum

8-week-old stage

Normal

Male Female

10x 3' v3

Nucleus

Homo sapiens

Innate lymphoid cell Naive thymus-derived cd4-positive, alpha-beta t cell Effector memory cd4-positive, alpha-beta t cell, terminally differentiated Gamma-delta t cell Cd16-positive, cd56-dim natural killer cell, human Effector memory cd4-positive, alpha-beta t cell Cd4-positive, alpha-beta memory t cell Cd8-positive, alpha-beta memory t cell Central memory cd4-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell Mucosal invariant t cell Naive thymus-derived cd8-positive, alpha-beta t cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Central memory cd8-positive, alpha-beta t cell Group 3 innate lymphoid cell Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Germinal center t cell

Jejunal epithelium Epithelial lining fluid Blood Mesenteric lymph node Inguinal lymph node Bone marrow Jejunum lamina propria Thoracic lymph node Lung Spleen

23-year-old stage 56-year-old stage 25-year-old stage 64-year-old stage Fourth decade stage 68-year-old stage Eighth decade stage 67-year-old stage 48-year-old stage 20-year-old stage Fifth decade stage 75-year-old stage 33-year-old stage 27-year-old stage Sixth decade stage 73-year-old stage Third decade stage

Normal

Male Female

10x 3' v3 10x 5' v2

Cell

Homo sapiens

Progenitor cell B cell Conventional dendritic cell Gamma-delta t cell Cd8-positive, alpha-beta t cell Natural killer cell Plasmablast Classical monocyte Non-classical monocyte Cd4-positive, alpha-beta t cell Plasmacytoid dendritic cell

Blood

69-year-old stage 83-year-old stage 77-year-old stage 80 year-old and over stage 47-year-old stage 25-year-old stage 79-year-old stage 50-year-old stage 38-year-old stage 66-year-old stage 68-year-old stage 49-year-old stage 82-year-old stage 78-year-old stage 67-year-old stage 63-year-old stage 86-year-old stage 48-year-old stage 31-year-old stage 65-year-old stage 58-year-old stage 42-year-old stage 71-year-old stage 60-year-old stage 39-year-old stage 76-year-old stage 41-year-old stage 34-year-old stage 45-year-old stage 61-year-old stage 74-year-old stage 62-year-old stage 75-year-old stage 33-year-old stage 43-year-old stage 59-year-old stage Adult stage 35-year-old stage 73-year-old stage 37-year-old stage 55-year-old stage 53-year-old stage 44-year-old stage

Normal Respiratory system disorder Covid-19

Male Female

10x 5' transcription profiling

Cell

Homo sapiens

Monocyte Neuron Macrophage B cell Renal intercalated cell Fibroblast Cell of skeletal muscle Peptic cell Cord blood hematopoietic stem cell Stromal cell Mesenchymal stem cell Chondrocyte Goblet cell Alternatively activated macrophage Embryonic stem cell Endocrine cell Primordial germ cell Myeloid cell Endothelial cell Erythroid lineage cell Smooth muscle cell Neutrophil Inflammatory cell Epithelial cell of proximal tubule Acinar cell Ventricular cardiac muscle cell Sertoli cell Professional antigen presenting cell Dendritic cell Epithelial cell Enterocyte Epithelial cell of exocrine pancreas Oligodendrocyte Kidney loop of henle epithelial cell Mesothelial cell Plasma cell Erythroid progenitor cell Thyroid follicular cell T cell Mast cell Basal cell Astrocyte Pulmonary alveolar type 2 cell Stratified epithelial cell

Ascending colon Liver Omentum Blood Umbilical cord blood Heart Cerebellum Temporal lobe Gallbladder Jejunum Pancreas Testis Ileum Brain Muscle organ Kidney Bone marrow Uterine cervix Esophagus Ovary Transverse colon Intestine Embryonic stem cell Pleura Rectum Adipose tissue Placenta Uterus Chorionic villus Fallopian tube Bladder organ Ureter Vault of skull Trachea Vermiform appendix Adrenal gland Stomach Lung Sigmoid colon Eye Artery Spleen Thyroid gland Prostate gland Rib Spinal cord Skin of body Thymus Duodenum

23-year-old stage 56-year-old stage 83-year-old stage 26th week post-fertilization stage Embryonic stage 10th week post-fertilization stage 12th week post-fertilization stage 47-year-old stage 25-year-old stage 64-year-old stage Newborn stage (0-28 days) 36-year-old stage 66-year-old stage 49-year-old stage 63-year-old stage 21-year-old stage 11th week post-fertilization stage 58-year-old stage 32-year-old stage 14th week post-fertilization stage 30-year-old stage 60-year-old stage 41-year-old stage 34-year-old stage 51-year-old stage 45-year-old stage 61-year-old stage 62-year-old stage 43-year-old stage 59-year-old stage 57-year-old stage 27-year-old stage 46-year-old stage 52-year-old stage 55-year-old stage 13th week post-fertilization stage

Normal

Male Female

Microwell-seq

Cell

Homo sapiens

Monocyte Macrophage Conventional dendritic cell Monocyte-derived dendritic cell Fibroblast T follicular helper cell Pericyte Regulatory t cell Endothelial cell of lymphatic vessel Endothelial cell Cd8-positive, alpha-beta t cell Natural killer cell Smooth muscle cell Follicular dendritic cell Adipocyte Dendritic cell Cd4-positive, alpha-beta t cell Plasmacytoid dendritic cell

Lymph node

Fourth decade stage Tenth decade stage Eighth decade stage Ninth decade stage Fifth decade stage Sixth decade stage Seventh decade stage Third decade stage

Normal B-cell non-hodgkin lymphoma

Male Female

10x multiome

Nucleus

Macaca fascicularis Mus musculus

Oligodendrocyte precursor cell Neuron Cell Fibroblast Cerebellar golgi cell Brain pericyte Unipolar brush cell Connective tissue cell Interneuron Microglial cell Oligodendrocyte Central nervous system macrophage Endothelial stalk cell Bergmann glial cell Purkinje cell Astrocyte Ependymal cell Cerebellar granule cell

Normal

10x 3' v3

Mus musculus musculus

Oligodendrocyte precursor cell Neuron Brain microvascular endothelial cell Fibroblast Choroid plexus epithelial cell Mural cell Microglial cell Oligodendrocyte Astrocyte

Normal

10x 3' transcription profiling

Homo sapiens

Macrophage Cardiac muscle cell Endocardial cell Pericyte Endothelial cell of lymphatic vessel Cardiac endothelial cell Adipocyte Cardiac ventricle fibroblast Cardiac neuron Vascular associated smooth muscle cell Mesothelial cell Mast cell Lymphocyte

Normal Hypertrophic cardiomyopathy Dilated cardiomyopathy

10x 3' v3

Homo sapiens

Monocyte Macrophage B cell Hematopoietic stem cell T follicular helper cell Innate lymphoid cell Naive thymus-derived cd4-positive, alpha-beta t cell Cd4-positive, alpha-beta thymocyte Gamma-delta t cell Regulatory t cell Common myeloid progenitor Myeloid leukocyte Granulocyte Colon macrophage Myeloid cell Myeloid dendritic cell Erythrocyte Erythroid lineage cell Cd8-positive, alpha-beta t cell Cd8-positive, alpha-beta thymocyte Natural killer cell Tissue-resident macrophage Neutrophil Activated cd8-positive, alpha-beta t cell Leukocyte Classical monocyte Hematopoietic precursor cell Thymocyte Non-classical monocyte Langerhans cell Naive thymus-derived cd8-positive, alpha-beta t cell Microglial cell Cd4-positive, alpha-beta t cell Basophil Mononuclear phagocyte Plasma cell Activated cd4-positive, alpha-beta t cell Erythroid progenitor cell Plasmacytoid dendritic cell Mature nk t cell Platelet Hematopoietic cell T cell Mast cell Intermediate monocyte

Posterior segment of eyeball Endometrium Abdominal aorta Skin of chest Aorta Stomach smooth muscle Ascending colon Liver Myometrium Submandibular gland Blood Brown adipose tissue Heart Chorioretinal region Right ovary Lacrimal gland Ocular surface region Small intestine Jejunum Retinal neural layer Muscle of abdomen Testis Ileum Conjunctiva Cardiac atrium Endocrine pancreas Buccal mucosa Sublingual gland Sclera Left coronary artery Exocrine pancreas Mesenteric lymph node Kidney Inguinal lymph node Bone marrow Eyelid Ovary Cardiac ventricle Utricle of membranous labyrinth Cortex of kidney Adipose tissue Uterus Vasculature Posterior part of tongue Bladder organ Parotid gland Inferior vena cava Trachea Muscle of pelvic diaphragm Mammary gland Stomach Lung Cornea Sigmoid colon Eye Skin of abdomen Coronary artery Spleen Subcutaneous adipose tissue Anterior segment of eyeball Left ovary Lymph node Crista ampullaris Large intestine Anterior part of tongue Right cardiac atrium Prostate gland Skin of body Heart right ventricle Thymus Mucosa of stomach Thoracic aorta Duodenum Muscularis mucosae of stomach

69-year-old stage 56-year-old stage 22-year-old stage 36-year-old stage 38-year-old stage 40-year-old stage 67-year-old stage 42-year-old stage 60-year-old stage 45-year-old stage 26-year-old stage 61-year-old stage 74-year-old stage 33-year-old stage 59-year-old stage 57-year-old stage 46-year-old stage 37-year-old stage 55-year-old stage

Normal

Male Female

Smart-seq2 Smart-seq3 10x 3' v3 10x 5' v2

Cell

Homo sapiens

Monocyte Large pre-b-ii cell Immature b cell Macrophage Hematopoietic stem cell Fibroblast Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell Myelocyte Innate lymphoid cell Naive thymus-derived cd4-positive, alpha-beta t cell Late pro-b cell Regulatory t cell Common myeloid progenitor Granulocyte Erythrocyte Granulocyte monocyte progenitor cell Natural killer cell Megakaryocyte-erythroid progenitor cell Double negative thymocyte B-2 b cell Common dendritic progenitor Neutrophil Small pre-b-ii cell Fraction a pre-pro b cell Dendritic cell Promonocyte Langerhans cell Naive thymus-derived cd8-positive, alpha-beta t cell Promyelocyte Vascular associated smooth muscle cell Group 3 innate lymphoid cell Plasma cell Hematopoietic multipotent progenitor cell Osteoclast Early lymphoid progenitor Plasmacytoid dendritic cell Mature b cell Pro-b cell Pre-conventional dendritic cell T cell Kupffer cell Mast cell Double-positive, alpha-beta thymocyte Group 2 innate lymphoid cell B-1 b cell Megakaryocyte

Liver Yolk sac Mesenteric lymph node Kidney Bone marrow Gut wall Spleen Skin of body Thymus

9th week post-fertilization stage 10th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 23 15th week post-fertilization stage 11th week post-fertilization stage Carnegie stage 20 14th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 22 Carnegie stage 13 Carnegie stage 19 13th week post-fertilization stage

Normal

Male Female

10x 3' v2 10x 5' v1

Cell