Mus musculus

Erythroid progenitor cell

Embryo

Theiler stage 22 Theiler stage 20 Theiler stage 14 Theiler stage 12 Theiler stage 24 Theiler stage 27 Theiler stage 17 Theiler stage 19 Theiler stage 15 Theiler stage 26 Theiler stage 21 Theiler stage 23 Theiler stage 13 Theiler stage 16 Theiler stage 25 Theiler stage 18

Normal

Male Female

Sci-rna-seq3

Nucleus

Homo sapiens

Oligodendrocyte precursor cell Cerebellar golgi cell Pericyte Endothelial cell Unipolar brush cell Molecular layer interneuron Interneuron Microglial cell Oligodendrocyte Granule cell Bergmann glial cell Purkinje cell Astrocyte

Normal Essential tremor

Parse evercode whole transcriptome v2

Homo sapiens

Neuron Gabaergic neuron Taste receptor cell Inhibitory interneuron Epithelial cell of lower respiratory tract Cardiac muscle cell Amacrine cell Endocardial cell Hematopoietic stem cell Glial cell Sympathetic neuron Chorionic trophoblast cell Cell of skeletal muscle Innate lymphoid cell Hepatic stellate cell Ganglion interneuron Stromal cell Bipolar neuron Blood vessel endothelial cell Goblet cell Pancreatic ductal cell Endocrine cell Myeloid cell Endothelial cell of lymphatic vessel Stellate neuron Retinal ganglion cell Unipolar brush cell Schwann cell Epithelial cell of thymus Smooth muscle cell Regular atrial cardiac myocyte Hepatoblast Photoreceptor cell Ciliated epithelial cell Chromaffin cell Acinar cell Ventricular cardiac muscle cell Professional antigen presenting cell Macroglial cell Intestinal epithelial cell Mueller cell Syncytiotrophoblast cell Thymocyte Retinal pigment epithelial cell Neuroendocrine cell Squamous epithelial cell Trophoblast giant cell Enteric neuron Microglial cell Epicardial adipocyte Corneal epithelial cell Lens fiber cell Oligodendrocyte Granule cell Mesothelial cell Extravillous trophoblast Visceromotor neuron Glutamatergic neuron Retina horizontal cell Skeletal muscle satellite cell Cortical cell of adrenal gland Hematopoietic cell Neuron associated cell (sensu vertebrata) Erythroblast Purkinje cell Dermis microvascular lymphatic vessel endothelial cell Astrocyte Mesangial cell Tuft cell Endothelial cell of vascular tree Megakaryocyte

Liver Heart Cerebellum Pancreas Muscle organ Kidney Intestine Placenta Adrenal gland Stomach Lung Eye Telencephalon Spleen Thymus

10th week post-fertilization stage 12th week post-fertilization stage 15th week post-fertilization stage 14th week post-fertilization stage 18th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage 13th week post-fertilization stage

Normal Trisomy 18

Male Female

Sci-rna-seq3

Nucleus Cell

Homo sapiens

Oligodendrocyte precursor cell Macrophage Diffuse bipolar 1 cell B cell Giant bipolar cell Amacrine cell Fibroblast Pigmented epithelial cell Flat midget bipolar cell Off midget ganglion cell Pericyte Blood vessel endothelial cell On midget ganglion cell Invaginating midget bipolar cell Retinal ganglion cell Diffuse bipolar 3a cell Non-myelinating schwann cell H1 horizontal cell Natural killer cell Capillary endothelial cell Rod bipolar cell Retinal astrocyte Diffuse bipolar 2 cell Fenestrated endothelial cell H2 horizontal cell Offx cell Adipocyte Retinal cone cell Melanocyte Mueller cell Dendritic cell Retinal rod cell Retinal pigment epithelial cell Microglial cell S cone cell Vascular associated smooth muscle cell Diffuse bipolar 5 cell Oligodendrocyte Off parasol ganglion cell On-blue cone bipolar cell Diffuse bipolar 4a cell Gabaergic amacrine cell Glycinergic amacrine cell Diffuse bipolar 4b cell Diffuse bipolar 6 cell T cell Endothelial cell of venule Mast cell Astrocyte Myelinating schwann cell Diffuse bipolar 3b cell On parasol ganglion cell

Cranial nerve ii Optic disc

69-year-old stage 56-year-old stage 77-year-old stage 81-year-old stage 47-year-old stage 25-year-old stage 90 year-old and over stage 64-year-old stage 10-year-old stage Newborn stage (0-28 days) 50-year-old stage 18-year-old stage 68-year-old stage 82-year-old stage 67-year-old stage 63-year-old stage 21-year-old stage 54-year-old stage 65-year-old stage 58-year-old stage 32-year-old stage 42-year-old stage 11-year-old stage 30-year-old stage 71-year-old stage 60-year-old stage 76-year-old stage 34-year-old stage 45-year-old stage 85-year-old stage 61-year-old stage 16-year-old stage 74-year-old stage 62-year-old stage 75-year-old stage 72-year-old stage 15-year-old stage 33-year-old stage 43-year-old stage 27-year-old stage 46-year-old stage 17-year-old stage 37-year-old stage 52-year-old stage 53-year-old stage 70-year-old stage 3-year-old stage

Normal

Male Female

10x 3' v3

Nucleus

Homo sapiens

Neuron Endothelial cell of artery Cardiac muscle cell Fibroblast Regular ventricular cardiac myocyte Pericyte Myeloid cell Endothelial cell of lymphatic vessel Endothelial cell Natural killer cell Smooth muscle cell Capillary endothelial cell Regular atrial cardiac myocyte Adipocyte Vascular associated smooth muscle cell Mesothelial cell Mast cell Vein endothelial cell Lymphocyte

Left cardiac atrium Heart left ventricle Apex of heart Interventricular septum Right cardiac atrium Heart right ventricle

47-year-old stage 66-year-old stage 68-year-old stage Eighth decade stage 63-year-old stage 48-year-old stage 21-year-old stage 20-year-old stage 54-year-old stage 65-year-old stage 71-year-old stage 60-year-old stage 39-year-old stage Fifth decade stage 51-year-old stage 61-year-old stage 62-year-old stage 75-year-old stage 59-year-old stage 27-year-old stage Sixth decade stage 46-year-old stage 35-year-old stage 73-year-old stage 52-year-old stage 55-year-old stage 44-year-old stage Seventh decade stage

Normal

Male Female

10x 3' v3 10x 3' v2 10x 5' v1

Nucleus Cell

Homo sapiens

Monocyte B cell Fibroblast Fallopian tube secretory epithelial cell Endothelial cell Dendritic cell Plasma cell T cell Mast cell

Liver Adnexa of uterus Omentum Abdominal wall Right ovary Diaphragm Transverse colon Intestine Ascitic fluid Fallopian tube Abdomen Urinary bladder Caecum Paracolic gutter Parietal peritoneum Left ovary Lymph node Large intestine Peritoneum

69-year-old stage 56-year-old stage 77-year-old stage 80 year-old and over stage 47-year-old stage 64-year-old stage 50-year-old stage 66-year-old stage 68-year-old stage 78-year-old stage 63-year-old stage 58-year-old stage 71-year-old stage 60-year-old stage 76-year-old stage 41-year-old stage 45-year-old stage 61-year-old stage 75-year-old stage 59-year-old stage 57-year-old stage 46-year-old stage 55-year-old stage 70-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Mus musculus

Monocyte Macrophage Cell B cell Fibroblast Blood vessel endothelial cell Regulatory t cell Granulocyte Endothelial cell of lymphatic vessel Colon glandular cell Natural killer cell Enteroendocrine cell of colon Intestinal crypt stem cell of colon Dendritic cell Myofibroblast cell Malignant cell Colonocyte T cell Mast cell Colon epithelial cell

Normal Colorectal carcinoma

Spatial transcriptomics Slide-seqv2 10x 3' v3 10x 3' v2

Homo sapiens

Cell Progenitor cell B cell Fibroblast Cell of skeletal muscle Innate lymphoid cell Granulocyte Myeloid cell Erythroid lineage cell Smooth muscle cell T cell Megakaryocyte

Normal

10x 5' v2 10x 3' v2

Homo sapiens

Monocyte Large pre-b-ii cell Neuron Immature b cell Macrophage Osteoblast Hematopoietic stem cell Glial cell Fibroblast Cell of skeletal muscle Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell Myelocyte Innate lymphoid cell Naive thymus-derived cd4-positive, alpha-beta t cell Late pro-b cell Stromal cell Chondrocyte Regulatory t cell Common myeloid progenitor Granulocyte Erythrocyte Endothelial cell Granulocyte monocyte progenitor cell Natural killer cell Keratinocyte Smooth muscle cell Enteroendocrine cell Megakaryocyte-erythroid progenitor cell Double negative thymocyte B-2 b cell Common dendritic progenitor Neutrophil Small pre-b-ii cell Fraction a pre-pro b cell Melanocyte Dendritic cell Promonocyte Epithelial cell Langerhans cell Naive thymus-derived cd8-positive, alpha-beta t cell Hepatocyte Myofibroblast cell Promyelocyte Vascular associated smooth muscle cell Mesothelial cell Group 3 innate lymphoid cell Plasma cell Eurydendroid cell Hematopoietic multipotent progenitor cell Osteoclast Early lymphoid progenitor Plasmacytoid dendritic cell Mature b cell Skeletal muscle satellite cell Epithelial cell of nephron Pro-b cell Pre-conventional dendritic cell Interstitial cell of cajal T cell Kupffer cell Mast cell Double-positive, alpha-beta thymocyte Group 2 innate lymphoid cell B-1 b cell Megakaryocyte

Liver Yolk sac Mesenteric lymph node Kidney Bone marrow Gut wall Spleen Skin of body Thymus

9th week post-fertilization stage 10th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 23 15th week post-fertilization stage 11th week post-fertilization stage Carnegie stage 20 14th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 22 Carnegie stage 13 Carnegie stage 19 13th week post-fertilization stage

Normal

Male Female

10x 3' v2 10x 5' v1

Cell

Homo sapiens

Macrophage Pulmonary alveolar type 1 cell B cell Conventional dendritic cell Club cell Multiciliated epithelial cell Stromal cell Pericyte Fibroblast of lung Regulatory t cell Myeloid cell Endothelial cell of lymphatic vessel Cd8-positive, alpha-beta t cell Natural killer cell Alveolar macrophage Smooth muscle cell Capillary endothelial cell Neutrophil Bronchus fibroblast of lung Classical monocyte Epithelial cell of lung Dendritic cell Non-classical monocyte Cd4-positive, alpha-beta t cell Malignant cell Pulmonary artery endothelial cell Mesothelial cell Plasma cell Plasmacytoid dendritic cell Cd1c-positive myeloid dendritic cell Mast cell Vein endothelial cell Pulmonary alveolar type 2 cell

Adrenal tissue Liver Brain Lung Lymph node Pleural effusion

69-year-old stage 23-year-old stage 56-year-old stage 83-year-old stage 77-year-old stage 22-year-old stage 47-year-old stage 25-year-old stage 64-year-old stage 79-year-old stage 50-year-old stage 36-year-old stage 66-year-old stage 68-year-old stage 40-year-old stage 49-year-old stage 82-year-old stage 78-year-old stage 67-year-old stage 63-year-old stage 86-year-old stage 48-year-old stage 21-year-old stage 31-year-old stage 20-year-old stage 54-year-old stage 28-year-old stage 80-year-old stage 65-year-old stage 58-year-old stage 32-year-old stage 42-year-old stage 71-year-old stage 60-year-old stage 76-year-old stage 41-year-old stage 51-year-old stage 45-year-old stage 26-year-old stage 61-year-old stage 74-year-old stage 62-year-old stage 75-year-old stage 72-year-old stage 43-year-old stage 59-year-old stage 29-year-old stage 57-year-old stage 46-year-old stage 35-year-old stage 73-year-old stage 37-year-old stage 52-year-old stage 55-year-old stage 53-year-old stage 70-year-old stage

Non-small cell lung carcinoma Normal Lung adenocarcinoma Chronic obstructive pulmonary disease Squamous cell lung carcinoma

Male Female

Smart-seq2 Gexscope technology Bd rhapsody whole transcriptome analysis 10x 3' v3 Drop-seq Indrop 10x 3' v2 10x 3' v1 10x 5' v1

Cell

Homo sapiens

Oligodendrocyte precursor cell Fibroblast Pericyte Endothelial cell Choroid plexus epithelial cell Vascular associated smooth muscle cell Oligodendrocyte Central nervous system macrophage Bergmann glial cell Astrocyte Ependymal cell

Brodmann (1909) area 19 Lateral nuclear group of thalamus Accessory basal amygdaloid nucleus Primary auditory cortex Agranular insular cortex Nucleus accumbens Septal nuclear complex Basolateral amygdaloid nuclear complex Retrosplenial region Cuneus cortex Body of caudate nucleus Pontine reticular formation Putamen Centromedian nucleus of thalamus Superior parietal cortex Epithalamus Granular insular cortex Pretectal region Cerebellar nuclear complex Inferior frontal gyrus Superior temporal gyrus Bed nucleus of stria terminalis Globus pallidus Rostral ca3 Cerebrocerebellum Anterior cortical amygdaloid nucleus Brodmann (1909) area 38 Supraoptic nucleus Claustrum of brain Preoptic area Gray matter of midbrain Pontine nuclear group Hypothalamus Parabrachial nucleus Brodmann (1909) area 23 Dentate gyrus of hippocampal formation Ventral anterior nucleus of thalamus Medial geniculate body Perirhinal cortex Temporal fusiform gyrus Dorsal tegmental nucleus Brodmann (1909) area 40 Uncal ca1 Brodmann (1909) area 25 Inferior temporal gyrus Hippocampal field Lateral geniculate body Piriform cortex Inferior olivary complex Brodmann (1909) area 35 Brodmann (1909) area 24 Lateral entorhinal cortex Midbrain nucleus Nucleus of medulla oblongata Subicular complex Midbrain tectum Medial zone of hypothalamus Lateral amygdaloid nucleus Cerebellar vermis Brodmann (1909) area 46 Intralaminar nuclear group Central amygdaloid nucleus Brodmann (1909) area 14 Primary somatosensory cortex Middle temporal gyrus Lateral posterior nucleus of thalamus Primary motor cortex Posterior parahippocampal gyrus Median tuberal portion Brodmann (1909) area 43 Anterior olfactory nucleus Medial dorsal nucleus of thalamus Mammillary body Medial entorhinal cortex Corticomedial nuclear complex Brodmann (1909) area 32 Extrastriate cortex Brodmann (1909) area 13 Pulvinar nucleus Substantia innominata Primary visual cortex Substantia nigra Red nucleus Spinal cord Subthalamic nucleus Pontine tegmentum Nucleus of dorsal thalamus Anterior nuclear group

50-year-old stage 42-year-old stage 60-year-old stage 29-year-old stage

Normal

Male Female

10x 3' v3

Nucleus

Callithrix jacchus

Oligodendrocyte precursor cell Neuron Brain microvascular endothelial cell Fibroblast Choroid plexus epithelial cell Mural cell Microglial cell Oligodendrocyte Astrocyte Ependymal cell

Normal

10x 3' transcription profiling