Home
Data
Contribute
Stats
Resources
Metadata schema
Tools
Community
About
Contact us
Organism
0
Clear
Cell Type
0
Clear
Tissue
0
Clear
Developmental Stage
0
Clear
Disease
0
Clear
Sex
0
Clear
Technology
0
Clear
Suspension Type
0
Clear
Cell
868
Nucleus
653
Data Source
1
Clear
Asap
43
Bgee
41
Cellxgene
2,042
Single cell portal
175
Sort
Most cells
Fewest cells
2301
datasets
CELLxGENE
1,462,702 cells
•
Ren et al., 2021
COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Monocyte
+17
Monocyte
Blood
+2
Blood
69-year-old stage
+63
69-year-old stage
Normal
+1
Normal
Male
+1
Male
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Monocyte
Macrophage
Cd14-positive, cd16-negative classical monocyte
B cell
Cd8-positive, alpha-beta t cell
Natural killer cell
Neutrophil
Dendritic cell
Epithelial cell
Squamous epithelial cell
Secretory cell
Plasma cell
Cd14-positive, cd16-positive monocyte
Ciliated cell
Mature gamma-delta t cell
Mast cell
Mature alpha-beta t cell
Megakaryocyte
Tissue
Blood
Lung
Saliva
Developmental stage
69-year-old stage
56-year-old stage
83-year-old stage
77-year-old stage
81-year-old stage
8-year-old stage
47-year-old stage
87-year-old stage
25-year-old stage
79-year-old stage
6-year-old stage
50-year-old stage
36-year-old stage
38-year-old stage
66-year-old stage
40-year-old stage
49-year-old stage
82-year-old stage
78-year-old stage
67-year-old stage
63-year-old stage
48-year-old stage
31-year-old stage
19-year-old stage
20-year-old stage
54-year-old stage
28-year-old stage
80-year-old stage
65-year-old stage
58-year-old stage
92-year-old stage
32-year-old stage
42-year-old stage
30-year-old stage
71-year-old stage
60-year-old stage
39-year-old stage
76-year-old stage
41-year-old stage
34-year-old stage
51-year-old stage
45-year-old stage
26-year-old stage
61-year-old stage
16-year-old stage
74-year-old stage
62-year-old stage
72-year-old stage
15-year-old stage
33-year-old stage
43-year-old stage
59-year-old stage
29-year-old stage
57-year-old stage
27-year-old stage
46-year-old stage
35-year-old stage
73-year-old stage
37-year-old stage
52-year-old stage
55-year-old stage
53-year-old stage
70-year-old stage
44-year-old stage
Disease
Normal
Covid-19
Sex
Male
Female
Technology
10x 3' v3
10x 5' v2
Suspension type
Cell
Related Links
Mendeley Data Dataset:dvp4y5ttd5
covid19.cancer-pku.cn
GEO series:GSE158055
cancer-pku.cn
HumanCellAtlas:5f607e50-ba22-4598-b1e9-f3d9d7a35dcc
ngdc.cncb.ac.cn
UCSC Cell Browser:covid19-critical-immuno
CELLxGENE
1,395,601 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+17
Oligodendrocyte precursor cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Male
+1
Male
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Corticothalamic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vip gabaergic interneuron
Sst gabaergic interneuron
Vascular leptomeningeal cell
L5 extratelencephalic projecting glutamatergic cortical neuron
Pvalb chandelier gabaergic interneuron
L6b glutamatergic cortical neuron
Sncg gabaergic interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Microglial cell
Oligodendrocyte
Cerebral cortex endothelial cell
Lamp5 gabaergic interneuron
Near-projecting glutamatergic cortical neuron
Pvalb gabaergic interneuron
Astrocyte of the cerebral cortex
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
83-year-old stage
77-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
50-year-old stage
68-year-old stage
82-year-old stage
78-year-old stage
89-year-old stage
86-year-old stage
80-year-old stage
42-year-old stage
85-year-old stage
75-year-old stage
72-year-old stage
29-year-old stage
88-year-old stage
70-year-old stage
84-year-old stage
Disease
Normal
Dementia
Sex
Male
Female
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
BRaIN-lab
AD knowledge portal:syn26223298
CELLxGENE
1,388,643 cells
•
Lake et al., 2025
Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney
Explore
h5ad
Homo sapiens
Homo sapiens
Macrophage
+62
Macrophage
Renal medulla
+3
Renal medulla
69-year-old stage
+23
69-year-old stage
Normal
+2
Normal
Male
+1
Male
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Macrophage
Epithelial cell of proximal tubule segment 2
B cell
Juxtaglomerular complex cell
Parietal epithelial cell
Vasa recta ascending limb cell
Peritubular capillary endothelial cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Epithelial cell of proximal tubule segment 1
Cycling macrophage
Cd8-alpha-positive thymic conventional dendritic cell
Kidney interstitial fibroblast
Kidney loop of henle cortical thick ascending limb epithelial cell
Kidney outer medulla peritubular capillary cell
Kidney loop of henle thick ascending limb epithelial cell
Erythrocyte
Endothelial cell
Vasa recta cell
Cd8-alpha-negative thymic conventional dendritic cell
Kidney collecting duct beta-intercalated cell
Natural killer cell
Papillary tips cell
Podocyte
Kidney connecting tubule epithelial cell
Naive regulatory t cell
Plasmacytoid dendritic cell, human
Neutrophil
Macula densa epithelial cell
Kidney cortex collecting duct principal cell
Classical monocyte
Epithelial cell of proximal tubule
Adipocyte
Vasa recta descending limb cell
Renal medullary fibroblast
Kidney interstitial myofibroblast
Effector memory cd8-positive, alpha-beta t cell
Non-classical monocyte
Kidney collecting duct principal cell
Mucosal invariant t cell
Migratory dendritic cell
Vascular associated smooth muscle cell
Cycling t cell
Kidney cortex peritubular capillary cell
Group 3 innate lymphoid cell
Plasma cell
Kidney efferent arteriole endothelial cell
Kidney loop of henle thin ascending limb epithelial cell
Kidney collecting duct intercalated cell
Neural cell
Renal interstitial pericyte
Kidney connecting tubule principal cell
Adventitial fibroblast
Kidney collecting duct alpha-intercalated cell
Kidney loop of henle thin descending limb epithelial cell
Kidney resident macrophage
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Endothelial cell of venule
Glomerular capillary endothelial cell
Mast cell
Epithelial cell of proximal tubule segment 3
Mesangial cell
Vein endothelial cell
Kidney distal convoluted tubule epithelial cell
Tissue
Renal medulla
Kidney
Cortex of kidney
Renal papilla
Developmental stage
69-year-old stage
56-year-old stage
64-year-old stage
Fourth decade stage
36-year-old stage
66-year-old stage
Tenth decade stage
49-year-old stage
Eighth decade stage
Ninth decade stage
63-year-old stage
54-year-old stage
76-year-old stage
14-year-old stage
Fifth decade stage
45-year-old stage
43-year-old stage
59-year-old stage
29-year-old stage
57-year-old stage
Sixth decade stage
70-year-old stage
Seventh decade stage
Third decade stage
Disease
Normal
Chronic kidney disease
Acute kidney failure
Sex
Male
Female
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
protocols.io:isolation-of-single-nuclei-from-solid-tissues-5qpvonb6bl4o/v1
protocols.io:single-cell-rna-sequencing-scrna-seq-eq2ly3zjpgx9/v1
protocols.io:10x-genomics-single-nucleus-multiome-rna-atac-assa-5qpvoby69l4o/v2
kpmp.org
Github:KPMP-Scientific/KPMP-Atlas-v2
protocols.io:10x-genomics-single-nucleus-rna-sequencing-for-tra-e6nvw99wzgmk/v3
CELLxGENE
1,378,211 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+17
Oligodendrocyte precursor cell
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Male
+1
Male
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Corticothalamic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vip gabaergic interneuron
Sst gabaergic interneuron
Vascular leptomeningeal cell
L5 extratelencephalic projecting glutamatergic cortical neuron
Pvalb chandelier gabaergic interneuron
L6b glutamatergic cortical neuron
Sncg gabaergic interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Microglial cell
Oligodendrocyte
Cerebral cortex endothelial cell
Lamp5 gabaergic interneuron
Near-projecting glutamatergic cortical neuron
Pvalb gabaergic interneuron
Astrocyte of the cerebral cortex
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
83-year-old stage
77-year-old stage
80 year-old and over stage
81-year-old stage
87-year-old stage
50-year-old stage
68-year-old stage
82-year-old stage
78-year-old stage
89-year-old stage
86-year-old stage
80-year-old stage
65-year-old stage
42-year-old stage
60-year-old stage
85-year-old stage
75-year-old stage
72-year-old stage
43-year-old stage
29-year-old stage
88-year-old stage
70-year-old stage
84-year-old stage
Disease
Normal
Dementia
Sex
Male
Female
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
Allen Brain Map:seattle-alzheimers-disease
CELLxGENE
1,358,573 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Monocyte
+90
Monocyte
Colon
+35
Colon
69-year-old stage
+90
69-year-old stage
Ulcerative colitis
+5
Ulcerative colitis
Male
+1
Male
10x 3' v3
+5
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Monocyte
Macrophage
Endothelial cell of artery
M cell of gut
Fibroblastic reticular cell
Progenitor cell
Conventional dendritic cell
Neutrophil progenitor cell
Glandular cell of esophagus
Fibroblast
Neuroblast (sensu vertebrata)
Transit amplifying cell
T follicular helper cell
Type x enteroendocrine cell
Memory b cell
Iga plasma cell
Naive b cell
Peptic cell
T-helper 17 cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Pericyte
Acinar cell of salivary gland
Paneth cell
Gamma-delta t cell
Fibroblast of gingiva
Igm plasma cell
Type ec enteroendocrine cell
Regulatory t cell
Enteroglial cell
Intestine goblet cell
Immature pericyte
Endothelial cell of lymphatic vessel
Erythrocyte
Endothelial cell
Cd16-positive, cd56-dim natural killer cell, human
Parietal cell
Muscle cell
Keratinocyte
Foveolar cell of stomach
Smooth muscle cell
Intestinal crypt stem cell
Enteroendocrine cell
Capillary endothelial cell
Germinal center b cell
Plasmacytoid dendritic cell, human
Cd4-positive, alpha-beta memory t cell
Plasmablast
Follicular dendritic cell
Cd8-positive, alpha-beta memory t cell
Cycling basal cell
Dendritic cell, human
Gastrointestinal tract (lamina propria) macrophage
Melanocyte
Igg plasma cell
Effector memory cd8-positive, alpha-beta t cell
Epithelial cell
Mucosal invariant t cell
Langerhans cell
Enterocyte
Naive thymus-derived cd8-positive, alpha-beta t cell
Myofibroblast cell
Enteric neuron
Afferent neuron
Interneuron
Vascular associated smooth muscle cell
Cycling t cell
Best4+ enterocyte
Colonocyte
Tuft cell of small intestine
Mesothelial cell
Group 3 innate lymphoid cell
Myoepithelial cell
Precursor b cell
Type g enteroendocrine cell
Trem2-positive macrophage
Inhibitory motor neuron
Ionocyte
Pro-b cell
Mesodermal cell
Interstitial cell of cajal
Cd16-negative, cd56-bright natural killer cell, human
Eosinophil
Mucous neck cell of gastric gland
Mast cell
Salivary gland glandular cell
Basal cell
Vein endothelial cell
Motor neuron
Angiogenic pericyte
Mesenchymal cell
Megakaryocyte
Tissue
Colon
Lamina propria of small intestine
Ascending colon
Descending colon
Periodontium
Ileum lamina propria
Small intestine
Jejunum
Ileum
Labial gland
Buccal mucosa
Colonic epithelium
Pyloric antrum
Body of stomach
Mesenteric lymph node
Lamina propria of mucosa of colon
Epithelium of rectum
Duodenal epithelium
Rectosigmoid junction
Esophagus
Transverse colon
Intestine
Rectum
Parotid gland
Vermiform appendix
Epithelium of stomach
Epithelium of small intestine
Caecum
Stomach
Sigmoid colon
Gingiva
Epithelium of esophagus
Colonic mucosa
Pylorus
Ileal epithelium
Duodenum
Developmental stage
69-year-old stage
9th week post-fertilization stage
23-year-old stage
56-year-old stage
77-year-old stage
81-year-old stage
Embryonic stage
10th week post-fertilization stage
Carnegie stage 18
22-year-old stage
12th week post-fertilization stage
87-year-old stage
5-year-old stage
Fourth decade stage
10-year-old stage
6-year-old stage
Newborn stage (0-28 days)
Young adult stage
50-year-old stage
66-year-old stage
68-year-old stage
Eighth decade stage
67-year-old stage
63-year-old stage
86-year-old stage
15th week post-fertilization stage
48-year-old stage
21-year-old stage
13-year-old stage
31-year-old stage
11th week post-fertilization stage
54-year-old stage
28-year-old stage
80-year-old stage
65-year-old stage
58-year-old stage
19th week post-fertilization stage
32-year-old stage
Carnegie stage 17
11-year-old stage
30-year-old stage
60-year-old stage
39-year-old stage
76-year-old stage
41-year-old stage
Juvenile stage (5-14 yo)
18th week post-fertilization stage
14-year-old stage
34-year-old stage
17th week post-fertilization stage
Pediatric stage
Fifth decade stage
16th week post-fertilization stage
51-year-old stage
45-year-old stage
2-month-old stage
26-year-old stage
85-year-old stage
61-year-old stage
Carnegie stage 22
Carnegie stage 16
9-year-old stage
12-year-old stage
Carnegie stage 19
74-year-old stage
62-year-old stage
75-year-old stage
72-year-old stage
33-year-old stage
43-year-old stage
59-year-old stage
29-year-old stage
Adult stage
57-year-old stage
Sixth decade stage
21st week post-fertilization stage
46-year-old stage
35-year-old stage
2-year-old stage
Prime adult stage
37-year-old stage
24-year-old stage
52-year-old stage
55-year-old stage
13th week post-fertilization stage
70-year-old stage
44-year-old stage
Seventh decade stage
4-year-old stage
84-year-old stage
Third decade stage
Disease
Ulcerative colitis
Gastric cancer
Colorectal cancer
Normal
Crohn disease
Inflammatory bowel disease
Sex
Male
Female
Technology
10x 3' v3
10x 5' transcription profiling
10x 5' v2
10x 3' v2
10x 3' v1
10x 5' v1
Suspension type
Cell
Related Links
teichlab.org
ArrayExpress BioStudies:E-MTAB-14050
CELLxGENE
1,350,748 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Cd14-positive, cd16-negative classical monocyte
+37
Cd14-positive, cd16-negative classical monocyte
Blood
Blood
56-year-old stage
+10
56-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Cd14-positive, cd16-negative classical monocyte
Memory b cell
Naive b cell
Innate lymphoid cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Common myeloid progenitor
Erythrocyte
Memory regulatory t cell
Cd16-positive, cd56-dim natural killer cell, human
Natural killer cell
Common lymphoid progenitor
Double negative thymocyte
Naive regulatory t cell
Effector memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Cd8-positive, alpha-beta memory t cell
Central memory cd4-positive, alpha-beta t cell
Effector memory cd8-positive, alpha-beta t cell
Mucosal invariant t cell
Basophil mast progenitor cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Central memory cd8-positive, alpha-beta t cell
Cd8aa(i) thymocyte
Plasma cell
Cd8-positive, alpha-beta regulatory t cell
Plasmacytoid dendritic cell
Cd1c-positive myeloid dendritic cell
Mature gamma-delta t cell
Transitional stage b cell
Axl+ dendritic cell, human
Cd14-low, cd16-positive monocyte
Platelet
Cd16-negative, cd56-bright natural killer cell, human
Memory ccr4-positive regulatory t cell
T cell
Be cell
Intermediate monocyte
Cd141-positive myeloid dendritic cell
Tissue
Blood
Developmental stage
56-year-old stage
64-year-old stage
63-year-old stage
65-year-old stage
58-year-old stage
60-year-old stage
61-year-old stage
62-year-old stage
59-year-old stage
57-year-old stage
55-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/sound-life-scrna-analysis
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
GEO series:GSE271896
dbGaP Study:phs003841
CELLxGENE
1,332,155 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+24
Oligodendrocyte precursor cell
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+83
69-year-old stage
Type 1 diabetes mellitus
+3
Type 1 diabetes mellitus
Male
+1
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Gabaergic neuron
B cell
Vip gabaergic interneuron
L6 intratelencephalic projecting glutamatergic neuron
Sst gabaergic interneuron
Pericyte
Endothelial cell
L6 corticothalamic-projecting glutamatergic cortical neuron
Vascular leptomeningeal cell
Perivascular macrophage
Natural killer cell
Smooth muscle cell
L5 extratelencephalic projecting glutamatergic cortical neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Microglial cell
Oligodendrocyte
L5/6 near-projecting glutamatergic neuron
Plasma cell
L6b glutamatergic neuron of the primary motor cortex
Lamp5 gabaergic interneuron
Pvalb gabaergic interneuron
T cell
Astrocyte
L2/3 intratelencephalic projecting glutamatergic neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
23-year-old stage
56-year-old stage
3-month-old stage
83-year-old stage
80 year-old and over stage
81-year-old stage
8-year-old stage
22-year-old stage
47-year-old stage
25-year-old stage
5-year-old stage
64-year-old stage
79-year-old stage
10-year-old stage
6-year-old stage
4-month-old stage
50-year-old stage
18-year-old stage
36-year-old stage
38-year-old stage
66-year-old stage
40-year-old stage
49-year-old stage
78-year-old stage
67-year-old stage
89-year-old stage
1-month-old stage
63-year-old stage
86-year-old stage
48-year-old stage
21-year-old stage
13-year-old stage
31-year-old stage
19-year-old stage
20-year-old stage
54-year-old stage
28-year-old stage
65-year-old stage
58-year-old stage
32-year-old stage
42-year-old stage
30-year-old stage
71-year-old stage
60-year-old stage
76-year-old stage
41-year-old stage
14-year-old stage
34-year-old stage
51-year-old stage
45-year-old stage
2-month-old stage
26-year-old stage
85-year-old stage
61-year-old stage
16-year-old stage
12-year-old stage
74-year-old stage
62-year-old stage
75-year-old stage
72-year-old stage
6-month-old stage
15-year-old stage
43-year-old stage
59-year-old stage
29-year-old stage
57-year-old stage
27-year-old stage
46-year-old stage
35-year-old stage
17-year-old stage
2-year-old stage
73-year-old stage
88-year-old stage
37-year-old stage
24-year-old stage
52-year-old stage
55-year-old stage
53-year-old stage
70-year-old stage
44-year-old stage
4-year-old stage
3-year-old stage
84-year-old stage
Disease
Type 1 diabetes mellitus
Normal
Type 2 diabetes mellitus
Atherosclerosis
Sex
Male
Female
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.05.19.541376
DOI:10.1101/2023.03.17.533005
DOI:10.1038/s41597-025-04687-5
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316586
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2024.11.02.24316590
Github:DiseaseNeuroGenomics/PsychADxD
DOI:10.1101/2024.11.04.24316495
CELLxGENE
1,322,061 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Cd14-positive, cd16-negative classical monocyte
+37
Cd14-positive, cd16-negative classical monocyte
Blood
Blood
56-year-old stage
+8
56-year-old stage
Cytomegalovirus infection
Cytomegalovirus infection
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Cd14-positive, cd16-negative classical monocyte
Memory b cell
Naive b cell
Innate lymphoid cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Common myeloid progenitor
Erythrocyte
Memory regulatory t cell
Cd16-positive, cd56-dim natural killer cell, human
Natural killer cell
Common lymphoid progenitor
Double negative thymocyte
Naive regulatory t cell
Effector memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Cd8-positive, alpha-beta memory t cell
Central memory cd4-positive, alpha-beta t cell
Effector memory cd8-positive, alpha-beta t cell
Mucosal invariant t cell
Basophil mast progenitor cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Central memory cd8-positive, alpha-beta t cell
Cd8aa(i) thymocyte
Plasma cell
Cd8-positive, alpha-beta regulatory t cell
Plasmacytoid dendritic cell
Cd1c-positive myeloid dendritic cell
Mature gamma-delta t cell
Transitional stage b cell
Axl+ dendritic cell, human
Cd14-low, cd16-positive monocyte
Platelet
Cd16-negative, cd56-bright natural killer cell, human
Memory ccr4-positive regulatory t cell
T cell
Be cell
Intermediate monocyte
Cd141-positive myeloid dendritic cell
Tissue
Blood
Developmental stage
56-year-old stage
64-year-old stage
66-year-old stage
65-year-old stage
58-year-old stage
60-year-old stage
59-year-old stage
57-year-old stage
55-year-old stage
Disease
Cytomegalovirus infection
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
GEO series:GSE271896
Github:aifimmunology/sound-life-scrna-analysis
dbGaP Study:phs003841
CELLxGENE
1,283,972 cells
•
Salcher et al., 2022
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Macrophage
+32
Macrophage
Adrenal tissue
+5
Adrenal tissue
69-year-old stage
+56
69-year-old stage
Non-small cell lung carcinoma
+4
Non-small cell lung carcinoma
Male
+1
Male
Smart-seq2
+8
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Macrophage
Pulmonary alveolar type 1 cell
B cell
Conventional dendritic cell
Club cell
Multiciliated epithelial cell
Stromal cell
Pericyte
Fibroblast of lung
Regulatory t cell
Myeloid cell
Endothelial cell of lymphatic vessel
Cd8-positive, alpha-beta t cell
Natural killer cell
Alveolar macrophage
Smooth muscle cell
Capillary endothelial cell
Neutrophil
Bronchus fibroblast of lung
Classical monocyte
Epithelial cell of lung
Dendritic cell
Non-classical monocyte
Cd4-positive, alpha-beta t cell
Malignant cell
Pulmonary artery endothelial cell
Mesothelial cell
Plasma cell
Plasmacytoid dendritic cell
Cd1c-positive myeloid dendritic cell
Mast cell
Vein endothelial cell
Pulmonary alveolar type 2 cell
Tissue
Adrenal tissue
Liver
Brain
Lung
Lymph node
Pleural effusion
Developmental stage
69-year-old stage
23-year-old stage
56-year-old stage
83-year-old stage
77-year-old stage
22-year-old stage
47-year-old stage
25-year-old stage
64-year-old stage
79-year-old stage
50-year-old stage
36-year-old stage
66-year-old stage
68-year-old stage
40-year-old stage
49-year-old stage
82-year-old stage
78-year-old stage
67-year-old stage
63-year-old stage
86-year-old stage
48-year-old stage
21-year-old stage
31-year-old stage
20-year-old stage
54-year-old stage
28-year-old stage
80-year-old stage
65-year-old stage
58-year-old stage
32-year-old stage
42-year-old stage
71-year-old stage
60-year-old stage
76-year-old stage
41-year-old stage
51-year-old stage
45-year-old stage
26-year-old stage
61-year-old stage
90-year-old stage
74-year-old stage
62-year-old stage
75-year-old stage
72-year-old stage
43-year-old stage
59-year-old stage
29-year-old stage
57-year-old stage
46-year-old stage
35-year-old stage
73-year-old stage
37-year-old stage
52-year-old stage
55-year-old stage
53-year-old stage
70-year-old stage
Disease
Non-small cell lung carcinoma
Normal
Lung adenocarcinoma
Chronic obstructive pulmonary disease
Squamous cell lung carcinoma
Sex
Male
Female
Technology
Smart-seq2
Gexscope technology
Bd rhapsody whole transcriptome analysis
10x 3' v3
Drop-seq
Indrop
10x 3' v2
10x 3' v1
10x 5' v1
Suspension type
Cell
Related Links
Zenodo record:7227571
CELLxGENE
1,281,499 cells
•
Wells et al., 2025
Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age
Explore
h5ad
Homo sapiens
Homo sapiens
Macrophage
+30
Macrophage
Jejunal epithelium
+13
Jejunal epithelium
23-year-old stage
+16
23-year-old stage
Normal
Normal
Male
+1
Male
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Macrophage
Progenitor cell
B cell
Conventional dendritic cell
Memory b cell
Naive b cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Effector memory cd4-positive, alpha-beta t cell, terminally differentiated
Gamma-delta t cell
Cd16-positive, cd56-dim natural killer cell, human
Germinal center b cell
Group 1 innate lymphoid cell
Effector memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Plasmablast
Classical monocyte
Cd8-positive, alpha-beta memory t cell
Central memory cd4-positive, alpha-beta t cell
Immature innate lymphoid cell
Effector memory cd8-positive, alpha-beta t cell
Non-classical monocyte
Mucosal invariant t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Central memory cd8-positive, alpha-beta t cell
Group 3 innate lymphoid cell
Plasma cell
Plasmacytoid dendritic cell
Cd16-negative, cd56-bright natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Mast cell
Tissue
Jejunal epithelium
Liver
Epithelial lining fluid
Blood
Colonic epithelium
Mesenteric lymph node
Lamina propria of mucosa of colon
Inguinal lymph node
Bone marrow
Jejunum lamina propria
Thoracic lymph node
Lung
Spleen
Skin of body
Developmental stage
23-year-old stage
56-year-old stage
25-year-old stage
64-year-old stage
Fourth decade stage
68-year-old stage
Eighth decade stage
67-year-old stage
48-year-old stage
20-year-old stage
Fifth decade stage
75-year-old stage
33-year-old stage
27-year-old stage
Sixth decade stage
73-year-old stage
Third decade stage
Disease
Normal
Sex
Male
Female
Technology
10x 3' v3
10x 5' v2
Suspension type
Cell
Related Links
GEO series:GSE299043
Github:YosefLab/CZI-Immuneaging
CELLxGENE
1,265,624 cells
•
Kock et al., 2025
Asian diversity in human immune cells
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+31
B cell
Blood
Blood
69-year-old stage
+54
69-year-old stage
Normal
Normal
Male
+1
Male
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Hematopoietic stem cell
Memory b cell
Naive b cell
Innate lymphoid cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Gamma-delta t cell
Regulatory t cell
Myeloid cell
Cd16-positive, cd56-dim natural killer cell, human
Cd8-positive, alpha-beta t cell
Natural killer cell
Cd14-positive monocyte
Effector memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta cytotoxic t cell
Cd8-positive, alpha-beta memory t cell
Central memory cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Double negative t regulatory cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Cd4-positive, alpha-beta t cell
Plasma cell
Cd8-positive, alpha-beta cytotoxic t cell
Plasmacytoid dendritic cell
Mature b cell
Cd1c-positive myeloid dendritic cell
Cd14-low, cd16-positive monocyte
Platelet
Pre-conventional dendritic cell
Cd16-negative, cd56-bright natural killer cell, human
T cell
Cd141-positive myeloid dendritic cell
Tissue
Blood
Developmental stage
69-year-old stage
23-year-old stage
56-year-old stage
77-year-old stage
22-year-old stage
47-year-old stage
25-year-old stage
64-year-old stage
50-year-old stage
36-year-old stage
38-year-old stage
66-year-old stage
68-year-old stage
40-year-old stage
49-year-old stage
67-year-old stage
63-year-old stage
48-year-old stage
21-year-old stage
31-year-old stage
19-year-old stage
54-year-old stage
28-year-old stage
65-year-old stage
58-year-old stage
32-year-old stage
42-year-old stage
30-year-old stage
71-year-old stage
60-year-old stage
39-year-old stage
41-year-old stage
34-year-old stage
51-year-old stage
45-year-old stage
26-year-old stage
61-year-old stage
62-year-old stage
75-year-old stage
72-year-old stage
33-year-old stage
43-year-old stage
59-year-old stage
29-year-old stage
57-year-old stage
27-year-old stage
46-year-old stage
35-year-old stage
73-year-old stage
37-year-old stage
24-year-old stage
52-year-old stage
55-year-old stage
53-year-old stage
44-year-old stage
Disease
Normal
Sex
Male
Female
Technology
10x 5' v2
Suspension type
Cell
Related Links
Github:prabhakarlab/AIDA_Phase1
Zenodo record:14722572
HumanCellAtlas:35d5b057-3daf-4ccd-8112-196194598893
celltype.info
HumanCellAtlas:f0f89c14-7460-4bab-9d42-22228a91f185
CELLxGENE
1,263,676 cells
•
Perez et al., 2022
Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus
Explore
h5ad
Homo sapiens
Homo sapiens
Progenitor cell
+10
Progenitor cell
Blood
Blood
69-year-old stage
+54
69-year-old stage
Normal
+1
Normal
Male
+1
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Progenitor cell
B cell
Conventional dendritic cell
Cd8-positive, alpha-beta t cell
Natural killer cell
Plasmablast
Classical monocyte
Non-classical monocyte
Cd4-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Lymphocyte
Tissue
Blood
Developmental stage
69-year-old stage
23-year-old stage
56-year-old stage
83-year-old stage
22-year-old stage
47-year-old stage
25-year-old stage
64-year-old stage
50-year-old stage
36-year-old stage
38-year-old stage
66-year-old stage
68-year-old stage
40-year-old stage
49-year-old stage
63-year-old stage
48-year-old stage
21-year-old stage
31-year-old stage
20-year-old stage
54-year-old stage
28-year-old stage
65-year-old stage
58-year-old stage
32-year-old stage
42-year-old stage
30-year-old stage
71-year-old stage
60-year-old stage
39-year-old stage
41-year-old stage
34-year-old stage
51-year-old stage
45-year-old stage
26-year-old stage
61-year-old stage
74-year-old stage
62-year-old stage
75-year-old stage
33-year-old stage
43-year-old stage
59-year-old stage
29-year-old stage
57-year-old stage
27-year-old stage
46-year-old stage
35-year-old stage
73-year-old stage
37-year-old stage
24-year-old stage
52-year-old stage
55-year-old stage
53-year-old stage
70-year-old stage
44-year-old stage
Disease
Normal
Systemic lupus erythematosus
Sex
Male
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
dbGaP Study:phs002812
GEO series:GSE137029
HumanCellAtlas:9fc0064b-84ce-40a5-a768-e6eb3d364ee0
Zenodo record:4724043#.YYQZDr3MKS5
UCSC Cell Browser:lupus-pbmc
1
2
3
4
5
6
…
383
384
Close