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Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Fewest cells
2339
datasets
CELLxGENE
4,720 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Committed oligodendrocyte precursor
Committed oligodendrocyte precursor
Brodmann (1909) area 13
+87
Brodmann (1909) area 13
42-year-old stage
+3
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Committed oligodendrocyte precursor
Tissue
Brodmann (1909) area 13
Brodmann (1909) area 14
Brodmann (1909) area 19
Brodmann (1909) area 23
Brodmann (1909) area 24
Brodmann (1909) area 25
Brodmann (1909) area 32
Brodmann (1909) area 35
Brodmann (1909) area 38
Brodmann (1909) area 40
Brodmann (1909) area 43
Brodmann (1909) area 46
Accessory basal amygdaloid nucleus
Agranular insular cortex
Anterior cortical amygdaloid nucleus
Anterior nuclear group
Anterior olfactory nucleus
Basolateral amygdaloid nuclear complex
Bed nucleus of stria terminalis
Body of caudate nucleus
Central amygdaloid nucleus
Centromedian nucleus of thalamus
Cerebellar nuclear complex
Cerebellar vermis
Cerebrocerebellum
Claustrum of brain
Corticomedial nuclear complex
Cuneus cortex
Dentate gyrus of hippocampal formation
Dorsal tegmental nucleus
Epithalamus
Extrastriate cortex
Globus pallidus
Granular insular cortex
Gray matter of midbrain
Hippocampal field
Hypothalamus
Inferior frontal gyrus
Inferior olivary complex
Inferior temporal gyrus
Intralaminar nuclear group
Lateral amygdaloid nucleus
Lateral entorhinal cortex
Lateral geniculate body
Lateral nuclear group of thalamus
Lateral posterior nucleus of thalamus
Mammillary body
Medial dorsal nucleus of thalamus
Medial entorhinal cortex
Medial geniculate body
Medial zone of hypothalamus
Median tuberal portion
Midbrain nucleus
Midbrain tectum
Middle temporal gyrus
Nucleus accumbens
Nucleus of dorsal thalamus
Nucleus of medulla oblongata
Parabrachial nucleus
Perirhinal cortex
Piriform cortex
Pontine nuclear group
Pontine reticular formation
Pontine tegmentum
Posterior parahippocampal gyrus
Preoptic area
Pretectal region
Primary auditory cortex
Primary motor cortex
Primary somatosensory cortex
Primary visual cortex
Pulvinar nucleus
Putamen
Red nucleus
Retrosplenial region
Rostral ca3
Septal nuclear complex
Spinal cord
Subicular complex
Substantia innominata
Substantia nigra
Subthalamic nucleus
Superior parietal cortex
Superior temporal gyrus
Supraoptic nucleus
Temporal fusiform gyrus
Uncal ca1
Ventral anterior nucleus of thalamus
Developmental stage
42-year-old stage
60-year-old stage
50-year-old stage
29-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
4,714 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+22
Oligodendrocyte
Red nucleus
Red nucleus
29-year-old stage
29-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Natural killer cell
Astrocyte
Bergmann glial cell
T cell
Medial ganglionic eminence derived interneuron
Pvalb chandelier gabaergic interneuron
Microglial cell
Oligodendrocyte precursor cell
Neuron
Pericyte
Committed oligodendrocyte precursor
Monocyte
Cerebellar inhibitory gabaergic interneuron
Cerebral cortex neuron
Cerebellar granule cell
Intratelencephalic-projecting glutamatergic cortical neuron
Vascular associated smooth muscle cell
Endothelial cell
Caudal ganglionic eminence derived interneuron
Central nervous system macrophage
Midbrain-derived inhibitory neuron
Fibroblast
Tissue
Red nucleus
Developmental stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
4,683 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Lamp5 gabaergic interneuron
Lamp5 gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Lamp5 gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Allen Brain Map:classes/multimodal-characterization
CELLxGENE
4,667 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
Bgee
4,661 cells
•
Guo et al., 2019
The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells
Explore
scRNA-Seq droplet-based processed expression values per cell population in Drosophila melanogaster (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Drosophila melanogaster (h5ad)
Drosophila melanogaster
Drosophila melanogaster
Adult middle midgut class ii enteroendocrine cell
+8
Adult middle midgut class ii enteroendocrine cell
Adult midgut
Adult midgut
Mature adult stage
Mature adult stage
Normal
Normal
Female
Female
10x genomics v2
10x genomics v2
Organism
Drosophila melanogaster
Cell type
Adult middle midgut class ii enteroendocrine cell
Adult middle midgut class i enteroendocrine cell
Adult anterior midgut class i enteroendocrine cell
Adult posterior midgut class i enteroendocrine cell
Adult enteroendocrine precursor cell
Adult anterior midgut class ii enteroendocrine cell
Adult posterior midgut class ii enteroendocrine cell
Adult class i enteroendocrine cell
Adult class iii enteroendocrine cell
Tissue
Adult midgut
Developmental stage
Mature adult stage
Disease
Normal
Sex
Female
Technology
10x genomics v2
Suspension type
Related Links
SRA Project:SRP200614
CELLxGENE
4,651 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+8
B cell
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
B cell
Neutrophil
Platelet
Mature nk t cell
Erythrocyte
Ionocyte
Epithelial cell
Mast cell
Myeloid cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
Mendeley Data Dataset:fm7v43jrbk/2
CELLxGENE
4,645 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
4,636 cells
•
Young et al., 2021
Single cell derived mRNA signals across human kidney tumors
Explore
h5ad
Homo sapiens
Homo sapiens
Leukocyte
+2
Leukocyte
Kidney
Kidney
Pediatric stage
Pediatric stage
Wilms tumor
Wilms tumor
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Leukocyte
Epithelial cell of nephron
Mesenchymal stem cell
Tissue
Kidney
Developmental stage
Pediatric stage
Disease
Wilms tumor
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
EGA dataset:EGAD00001007498
EGA Study:EGAS00001003445
Github:cancerit/cgpPindel
Github:constantAmateur/cellSignalAnalysis
EGA dataset:EGAD00001004304
EGA dataset:EGAD00001006296
Github:cancerit/CaVEMan
CELLxGENE
4,630 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
CELLxGENE
4,620 cells
•
Stewart et al., 2019
Spatiotemporal immune zonation of the human kidney
Explore
h5ad
Homo sapiens
Homo sapiens
Renal intercalated cell
+16
Renal intercalated cell
Cortex of kidney
+4
Cortex of kidney
49-year-old stage
+11
49-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Renal intercalated cell
Kidney loop of henle thick ascending limb epithelial cell
Renal principal cell
Kidney interstitial fibroblast
Progenitor cell
Podocyte
Epithelial cell of proximal tubule
Myofibroblast cell
Renal beta-intercalated cell
Vasa recta ascending limb cell
Vasa recta descending limb cell
Capillary endothelial cell
Urothelial cell
Renal alpha-intercalated cell
Kidney connecting tubule epithelial cell
Glomerular endothelial cell
Kidney epithelial cell
Tissue
Cortex of kidney
Kidney
Kidney blood vessel
Renal medulla
Renal pelvis
Developmental stage
49-year-old stage
64-year-old stage
4-year-old stage
63-year-old stage
72-year-old stage
67-year-old stage
2-year-old stage
12-year-old stage
44-year-old stage
19-month-old stage
53-year-old stage
70-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
kidneycellatlas.org
HumanCellAtlas:abe1a013-af7a-45ed-8c26-f3793c24a1f4
Single Cell Expression Atlas Experiment:E-HCAD-10
UCSC Cell Browser:kidney-atlas
UCSC Genome Browser:hgTrackUi?db=hg38&g=kidneyStewart&position=default
CELLxGENE
4,616 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Notochordal cell
+15
Notochordal cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Notochordal cell
Spinal cord interneuron
Paraxial cell
Neurectodermal cell
Gut endothelial cell
Splanchnic mesodermal cell
Hemangioblast
Cardiac valve cell
Endodermal cell
Primitive red blood cell
Midbrain dopaminergic neuron
Anterior visceral endoderm cell
Premigratory neural crest cell
Mesodermal cell
Neuroplacodal cell
Surface ectodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
CELLxGENE
4,603 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Dendritic cell
+6
Dendritic cell
Blood
Blood
49-year-old stage
49-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Dendritic cell
B cell
Neutrophil
Platelet
Mature nk t cell
Plasma cell
Myeloid cell
Tissue
Blood
Developmental stage
49-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
Mendeley Data Dataset:fm7v43jrbk/2
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