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893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
179
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Fewest cells
2339
datasets
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Cd14-low, cd16-positive monocyte
+25
Cd14-low, cd16-positive monocyte
Sinoatrial node
Sinoatrial node
Third decade stage
Third decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cd14-low, cd16-positive monocyte
Naive thymus-derived cd4-positive, alpha-beta t cell
Regular atrial cardiac myocyte
B cell
Endothelial cell of artery
Glial cell
Pericyte
Endothelial cell of lymphatic vessel
Neutrophil
Monocyte
Cd8-positive, alpha-beta cytotoxic t cell
Smooth muscle cell
Macrophage
Fibroblast of cardiac tissue
Adipocyte
Smooth muscle cell of the pulmonary artery
Endothelial cell
Cd14-positive monocyte
Dendritic cell, human
Endocardial cell
Activated cd4-positive, alpha-beta t cell
Vein endothelial cell
Plasma cell
Mast cell
Mucosal invariant t cell
Cardiac pacemaker cell of sinoatrial node
Tissue
Sinoatrial node
Developmental stage
Third decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12975
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
ArrayExpress BioStudies:E-MTAB-12919
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
B cell
+8
B cell
Labial gland
Labial gland
55-year-old stage
+1
55-year-old stage
Sjogren syndrome
Sjogren syndrome
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
B cell
Iga plasma cell
Cd8-positive, alpha-beta cytotoxic t cell
Duct epithelial cell
Cd4-positive, alpha-beta t cell
Macrophage
Endothelial cell
Fibroblast
Acinar cell of salivary gland
Tissue
Labial gland
Developmental stage
55-year-old stage
52-year-old stage
Disease
Sjogren syndrome
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github:pranzatelli/scRNAseqNM2023
dbGaP Study:phs002446
CELLxGENE
4,992 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
Pulmonary alveolar type 2 cell
+18
Pulmonary alveolar type 2 cell
Lung
Lung
20th week post-fertilization stage
20th week post-fertilization stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Pulmonary alveolar type 2 cell
Bronchus fibroblast of lung
Club cell
Endothelial cell of artery
Lung multiciliated epithelial cell
Epithelial cell of lung
Fibroblast of lung
Cd4-positive, alpha-beta t cell
Myofibroblast cell
Macrophage
Tracheobronchial smooth muscle cell
Respiratory tract epithelial cell
Erythrocyte
Vascular associated smooth muscle cell
Pulmonary alveolar type 1 cell
Vein endothelial cell
Pulmonary neuroendocrine cell
Pulmonary interstitial fibroblast
Mesothelial cell
Tissue
Lung
Developmental stage
20th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-11278
ArrayExpress BioStudies:E-MTAB-11267
ArrayExpress BioStudies:E-MTAB-11266
Sanger Dataset:fetal-lung
genome.ucsc.edu
Github:Peng-He-Lab/Human_fetal_lung_cell_atlas_2022
ArrayExpress BioStudies:E-MTAB-11265
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Homo sapiens
Homo sapiens
Hepatocyte
+9
Hepatocyte
Liver
Liver
58-year-old stage
58-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Hepatocyte
Cholangiocyte
Non-classical monocyte
Kupffer cell
Endothelial cell of periportal hepatic sinusoid
Macrophage
Erythrocyte
Vascular associated smooth muscle cell
Fibroblast
Plasma cell
Tissue
Liver
Developmental stage
58-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GEO series:GSE192742
livercellatlas.org
HumanCellAtlas:425c2759-db66-4c93-a358-a562c069b1f1
CELLxGENE
4,992 cells
•
Valdeolivas et al., 2024
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Goblet cell
+13
Goblet cell
Rectum
Rectum
Eighth decade stage
Eighth decade stage
Colorectal cancer
Colorectal cancer
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Goblet cell
T-helper 17 cell
Regulatory t cell
B cell
Enterocyte
Iga plasma cell
Malignant cell
Cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta t cell
Igg plasma cell
Endothelial tip cell
Inflammatory macrophage
Stromal cell
Transit amplifying cell of colon
Tissue
Rectum
Developmental stage
Eighth decade stage
Disease
Colorectal cancer
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github:alberto-valdeolivas/ST_CRC_CMS
Zenodo record:7760264
Zenodo record:7744244
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmacytoid dendritic cell
+11
Plasmacytoid dendritic cell
Liver
Liver
68-year-old stage
68-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Plasmacytoid dendritic cell
Hepatocyte
Hepatic stellate cell
Cholangiocyte
Non-classical monocyte
Conventional dendritic cell
Macrophage
Endothelial cell of pericentral hepatic sinusoid
Vascular associated smooth muscle cell
Basophil
Fibroblast
Plasma cell
Tissue
Liver
Developmental stage
68-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GEO series:GSE192742
livercellatlas.org
HumanCellAtlas:425c2759-db66-4c93-a358-a562c069b1f1
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+7
Natural killer cell
Nose skin
Nose skin
72-year-old stage
72-year-old stage
Basal cell carcinoma
Basal cell carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Natural killer cell
Regulatory t cell
Basal cell of epidermis
Basal cell
Endothelial cell of vascular tree
Suprabasal keratinocyte
Fibroblast
Plasma cell
Tissue
Nose skin
Developmental stage
72-year-old stage
Disease
Basal cell carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
spatial-skin-atlas.cellgeni.sanger.ac.uk
ArrayExpress BioStudies:E-MTAB-13085
ArrayExpress BioStudies:E-MTAB-13084
HumanCellAtlas:e49e556a-da5a-442a-b45c-8691b457623e
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+18
Intestine goblet cell
Colon
Colon
13th week post-fertilization stage
13th week post-fertilization stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Intestine goblet cell
Transit amplifying cell of small intestine
Intestinal crypt stem cell of large intestine
Progenitor cell
Glial cell
Enterocyte
Gut endothelial cell
Pericyte
Intestinal crypt stem cell of small intestine
Myofibroblast cell
Enteroendocrine cell
Inhibitory motor neuron
Interstitial cell of cajal
Transit amplifying cell of colon
Enteric smooth muscle cell
Interneuron
Gut absorptive cell
Fibroblast
Mesothelial cell
Tissue
Colon
Developmental stage
13th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GEO series:GSE158328
simmonslab.shinyapps.io
Mendeley Data Dataset:gncg57p5x9/2
dropbox.com
HumanCellAtlas:fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f
GEO series:GSE158702
CELLxGENE
4,992 cells
•
Guilliams et al., 2022
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
Explore
h5ad
Mus musculus
Mus musculus
Plasmacytoid dendritic cell
+13
Plasmacytoid dendritic cell
Liver
Liver
10-month-old stage
10-month-old stage
Metabolic dysfunction-associated steatotic liver disease
Metabolic dysfunction-associated steatotic liver disease
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Plasmacytoid dendritic cell
Hepatocyte
Endothelial cell of hepatic sinusoid
Peritoneal macrophage
Cholangiocyte
B cell
Conventional dendritic cell
Kupffer cell
Endothelial cell of periportal hepatic sinusoid
Macrophage
Erythrocyte
Endothelial cell of pericentral hepatic sinusoid
Fibroblast
Mesothelial cell
Tissue
Liver
Developmental stage
10-month-old stage
Disease
Metabolic dysfunction-associated steatotic liver disease
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GEO series:GSE192742
livercellatlas.org
HumanCellAtlas:425c2759-db66-4c93-a358-a562c069b1f1
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Cd14-low, cd16-positive monocyte
+19
Cd14-low, cd16-positive monocyte
Sinoatrial node
Sinoatrial node
Fifth decade stage
Fifth decade stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Cd14-low, cd16-positive monocyte
Regular atrial cardiac myocyte
B cell
Endothelial cell of artery
Glial cell
Endothelial cell of lymphatic vessel
Neutrophil
Monocyte
Smooth muscle cell
Macrophage
Fibroblast of cardiac tissue
Adipocyte
Smooth muscle cell of the pulmonary artery
Endothelial cell
Cd14-positive monocyte
Dendritic cell, human
Vein endothelial cell
Plasma cell
Mast cell
Cardiac pacemaker cell of sinoatrial node
Tissue
Sinoatrial node
Developmental stage
Fifth decade stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12975
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
ArrayExpress BioStudies:E-MTAB-12919
CELLxGENE
4,992 cells
Explore
h5ad
Mus musculus
Mus musculus
Immature single positive thymocyte
+3
Immature single positive thymocyte
Thymus
Thymus
6-week-old stage
6-week-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Mus musculus
Cell type
Immature single positive thymocyte
Epithelial cell of thymus
Cd4-positive, alpha-beta thymocyte
Double-positive, alpha-beta thymocyte
Tissue
Thymus
Developmental stage
6-week-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Regular atrial cardiac myocyte
+7
Regular atrial cardiac myocyte
Left cardiac atrium
Left cardiac atrium
Seventh decade stage
Seventh decade stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Regular atrial cardiac myocyte
Endothelial cell of artery
Endothelial cell of lymphatic vessel
Fibroblast of cardiac tissue
Adipocyte
Smooth muscle cell of the pulmonary artery
Endocardial cell
Mesothelial cell
Tissue
Left cardiac atrium
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12975
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
ArrayExpress BioStudies:E-MTAB-12919
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